Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OB04_RS21050 Genome accession   NZ_CP009796
Coordinates   4065098..4066210 (+) Length   370 a.a.
NCBI ID   WP_038429975.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4060098..4071210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS21025 (OB04_04131) rnpA 4060808..4061158 (-) 351 WP_003242628.1 ribonuclease P protein component -
  OB04_RS21030 rpmH 4061310..4061444 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  OB04_RS21035 (OB04_04132) dnaA 4062071..4063411 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  OB04_RS21040 (OB04_04133) dnaN 4063600..4064736 (+) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  OB04_RS21045 (OB04_04134) rlbA 4064867..4065082 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  OB04_RS21050 (OB04_04135) recF 4065098..4066210 (+) 1113 WP_038429975.1 DNA replication/repair protein RecF Machinery gene
  OB04_RS21055 (OB04_04136) remB 4066228..4066473 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  OB04_RS21060 (OB04_04137) gyrB 4066528..4068444 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OB04_RS21065 (OB04_04138) gyrA 4068655..4071120 (+) 2466 WP_014475555.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42313.35 Da        Isoelectric Point: 7.3978

>NTDB_id=132375 OB04_RS21050 WP_038429975.1 4065098..4066210(+) (recF) [Bacillus subtilis strain SG6]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKHTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=132375 OB04_RS21050 WP_038429975.1 4065098..4066210(+) (recF) [Bacillus subtilis strain SG6]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACATACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997

Multiple sequence alignment