Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OB04_RS08805 Genome accession   NZ_CP009796
Coordinates   1650376..1651155 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SG6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1645376..1656155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS08785 (OB04_01724) trmFO 1646069..1647376 (+) 1308 WP_038428951.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OB04_RS08790 (OB04_01725) xerC 1647444..1648358 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  OB04_RS08795 (OB04_01726) clpQ 1648371..1648916 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  OB04_RS08800 (OB04_01727) hslU 1648933..1650336 (+) 1404 WP_038428952.1 HslU--HslV peptidase ATPase subunit -
  OB04_RS08805 (OB04_01728) codY 1650376..1651155 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OB04_RS08810 (OB04_01729) flgB 1651535..1651924 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  OB04_RS08815 (OB04_01730) flgC 1651924..1652376 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  OB04_RS08820 (OB04_01731) fliE 1652387..1652707 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  OB04_RS08825 (OB04_01732) fliF 1652753..1654363 (+) 1611 WP_052124600.1 flagellar basal-body MS-ring/collar protein FliF -
  OB04_RS08830 (OB04_01733) fliG 1654376..1655392 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  OB04_RS08835 (OB04_01734) fliH 1655385..1656137 (+) 753 WP_038430009.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=132330 OB04_RS08805 WP_003220850.1 1650376..1651155(+) (codY) [Bacillus subtilis strain SG6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=132330 OB04_RS08805 WP_003220850.1 1650376..1651155(+) (codY) [Bacillus subtilis strain SG6]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAACTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment