Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BWEI_RS05450 | Genome accession | NZ_CP009746 |
| Coordinates | 1016236..1017015 (+) | Length | 259 a.a. |
| NCBI ID | WP_002014541.1 | Uniprot ID | - |
| Organism | Bacillus mycoides strain WSBC10204 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 976863..1039258 | 1016236..1017015 | within | 0 |
Gene organization within MGE regions
Location: 976863..1039258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWEI_RS05260 (bwei_1092) | rsmB | 977423..978757 (+) | 1335 | WP_002128834.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BWEI_RS05265 (bwei_1093) | rlmN | 978762..979850 (+) | 1089 | WP_002033782.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BWEI_RS05270 (bwei_1094) | - | 979855..980607 (+) | 753 | WP_002142923.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BWEI_RS05275 (bwei_1095) | pknB | 980616..982589 (+) | 1974 | WP_002142922.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| BWEI_RS05280 (bwei_1096) | rsgA | 982860..983741 (+) | 882 | WP_002033786.1 | ribosome small subunit-dependent GTPase A | - |
| BWEI_RS05285 (bwei_1097) | rpe | 983744..984388 (+) | 645 | WP_002014505.1 | ribulose-phosphate 3-epimerase | - |
| BWEI_RS05290 (bwei_1098) | - | 984489..985169 (+) | 681 | WP_002033788.1 | thiamine diphosphokinase | - |
| BWEI_RS05295 | spoVM | 985236..985316 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BWEI_RS05300 (bwei_1099) | rpmB | 985390..985578 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| BWEI_RS05305 (bwei_1100) | - | 985957..986319 (+) | 363 | WP_002014507.1 | Asp23/Gls24 family envelope stress response protein | - |
| BWEI_RS05310 (bwei_1101) | - | 986342..988018 (+) | 1677 | WP_002033789.1 | DAK2 domain-containing protein | - |
| BWEI_RS05315 (bwei_1102) | recG | 988443..990491 (+) | 2049 | WP_002014510.1 | ATP-dependent DNA helicase RecG | - |
| BWEI_RS05320 (bwei_1103) | fapR | 990580..991173 (+) | 594 | WP_000747354.1 | transcription factor FapR | - |
| BWEI_RS05325 (bwei_1104) | plsX | 991170..992162 (+) | 993 | WP_002128828.1 | phosphate acyltransferase PlsX | - |
| BWEI_RS05330 (bwei_1105) | fabD | 992177..993121 (+) | 945 | WP_002033790.1 | ACP S-malonyltransferase | - |
| BWEI_RS05335 (bwei_1106) | fabG | 993121..993861 (+) | 741 | WP_002014514.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BWEI_RS05340 (bwei_1107) | acpP | 993931..994164 (+) | 234 | WP_002014515.1 | acyl carrier protein | - |
| BWEI_RS05345 (bwei_1108) | rncS | 994223..994960 (+) | 738 | WP_002033792.1 | ribonuclease III | - |
| BWEI_RS05350 (bwei_1109) | smc | 995109..998678 (+) | 3570 | WP_002033793.1 | chromosome segregation protein SMC | - |
| BWEI_RS05355 (bwei_1110) | ftsY | 998693..999682 (+) | 990 | WP_002088200.1 | signal recognition particle-docking protein FtsY | - |
| BWEI_RS05360 (bwei_1111) | - | 999815..1000147 (+) | 333 | WP_002033794.1 | putative DNA-binding protein | - |
| BWEI_RS05365 (bwei_1112) | ffh | 1000160..1001509 (+) | 1350 | WP_002014519.1 | signal recognition particle protein | - |
| BWEI_RS05370 (bwei_1113) | rpsP | 1001610..1001882 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BWEI_RS05375 (bwei_1114) | - | 1001897..1002124 (+) | 228 | WP_002088196.1 | KH domain-containing protein | - |
| BWEI_RS05380 (bwei_1115) | rimM | 1002246..1002761 (+) | 516 | WP_002014521.1 | ribosome maturation factor RimM | - |
| BWEI_RS05385 (bwei_1116) | trmD | 1002761..1003495 (+) | 735 | WP_002014522.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BWEI_RS05390 (bwei_1117) | rplS | 1003642..1003986 (+) | 345 | WP_002014524.1 | 50S ribosomal protein L19 | - |
| BWEI_RS05395 (bwei_1118) | lepB | 1004087..1004638 (+) | 552 | WP_002066791.1 | signal peptidase I | - |
| BWEI_RS05400 (bwei_1119) | ylqF | 1004659..1005549 (+) | 891 | WP_002033795.1 | ribosome biogenesis GTPase YlqF | - |
| BWEI_RS05405 (bwei_1120) | - | 1005605..1006378 (+) | 774 | WP_002014527.1 | ribonuclease HII | - |
| BWEI_RS05410 (bwei_1121) | sucC | 1006572..1007732 (+) | 1161 | WP_002014529.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BWEI_RS05415 (bwei_1122) | sucD | 1007752..1008654 (+) | 903 | WP_002033796.1 | succinate--CoA ligase subunit alpha | - |
| BWEI_RS05420 (bwei_1123) | dprA | 1008743..1009612 (+) | 870 | WP_002142916.1 | DNA-processing protein DprA | - |
| BWEI_RS05425 (bwei_1124) | topA | 1009757..1011835 (+) | 2079 | WP_002088184.1 | type I DNA topoisomerase | - |
| BWEI_RS05430 (bwei_1125) | trmFO | 1011884..1013188 (+) | 1305 | WP_002014534.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BWEI_RS05435 (bwei_1126) | xerC | 1013260..1014159 (+) | 900 | WP_078175468.1 | tyrosine recombinase XerC | - |
| BWEI_RS05440 (bwei_1127) | hslV | 1014202..1014744 (+) | 543 | WP_002014538.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BWEI_RS05445 (bwei_1128) | hslU | 1014767..1016158 (+) | 1392 | WP_002014539.1 | ATP-dependent protease ATPase subunit HslU | - |
| BWEI_RS05450 (bwei_1129) | codY | 1016236..1017015 (+) | 780 | WP_002014541.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BWEI_RS05455 (bwei_1130) | rpsB | 1017370..1018071 (+) | 702 | WP_002088178.1 | 30S ribosomal protein S2 | - |
| BWEI_RS05460 (bwei_1131) | tsf | 1018175..1019062 (+) | 888 | WP_002088177.1 | translation elongation factor Ts | - |
| BWEI_RS05465 (bwei_1132) | pyrH | 1019129..1019851 (+) | 723 | WP_002014544.1 | UMP kinase | - |
| BWEI_RS05470 (bwei_1133) | frr | 1019855..1020412 (+) | 558 | WP_000531506.1 | ribosome recycling factor | - |
| BWEI_RS05475 (bwei_1134) | - | 1020498..1021274 (+) | 777 | WP_002014545.1 | isoprenyl transferase | - |
| BWEI_RS05480 (bwei_1135) | cdsA | 1021292..1022083 (+) | 792 | WP_002088171.1 | phosphatidate cytidylyltransferase | - |
| BWEI_RS05485 (bwei_1136) | dxr | 1022107..1023249 (+) | 1143 | WP_002014547.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BWEI_RS05490 (bwei_1137) | rseP | 1023267..1024523 (+) | 1257 | WP_033709384.1 | RIP metalloprotease RseP | - |
| BWEI_RS05495 (bwei_1138) | - | 1024633..1026333 (+) | 1701 | WP_002033676.1 | proline--tRNA ligase | - |
| BWEI_RS05500 (bwei_1139) | - | 1026458..1030759 (+) | 4302 | WP_002033677.1 | PolC-type DNA polymerase III | - |
| BWEI_RS05505 (bwei_1140) | rimP | 1031093..1031563 (+) | 471 | WP_002088165.1 | ribosome maturation factor RimP | - |
| BWEI_RS05510 (bwei_1141) | nusA | 1031581..1032687 (+) | 1107 | WP_002014554.1 | transcription termination factor NusA | - |
| BWEI_RS05515 (bwei_1142) | rnpM | 1032699..1032971 (+) | 273 | WP_002088161.1 | RNase P modulator RnpM | - |
| BWEI_RS05520 (bwei_1143) | - | 1032972..1033283 (+) | 312 | WP_002033679.1 | YlxQ family RNA-binding protein | - |
| BWEI_RS05525 (bwei_1144) | infB | 1033288..1035354 (+) | 2067 | WP_002014558.1 | translation initiation factor IF-2 | - |
| BWEI_RS05530 (bwei_1145) | - | 1035351..1035632 (+) | 282 | WP_002088157.1 | DUF503 domain-containing protein | - |
| BWEI_RS05535 (bwei_1146) | rbfA | 1035648..1036004 (+) | 357 | WP_000776437.1 | 30S ribosome-binding factor RbfA | - |
| BWEI_RS05540 (bwei_1147) | truB | 1036095..1037018 (+) | 924 | WP_002033681.1 | tRNA pseudouridine(55) synthase TruB | - |
| BWEI_RS05545 (bwei_1148) | ribF | 1037062..1038033 (+) | 972 | WP_002128800.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BWEI_RS05550 (bwei_1149) | rpsO | 1038134..1038403 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.99 Da Isoelectric Point: 4.7251
>NTDB_id=131779 BWEI_RS05450 WP_002014541.1 1016236..1017015(+) (codY) [Bacillus mycoides strain WSBC10204]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=131779 BWEI_RS05450 WP_002014541.1 1016236..1017015(+) (codY) [Bacillus mycoides strain WSBC10204]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |