Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BG05_RS12770 | Genome accession | NZ_CP009692 |
| Coordinates | 2081908..2082687 (+) | Length | 259 a.a. |
| NCBI ID | WP_002014541.1 | Uniprot ID | - |
| Organism | Bacillus mycoides strain ATCC 6462 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2042553..2104908 | 2081908..2082687 | within | 0 |
Gene organization within MGE regions
Location: 2042553..2104908
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG05_RS12580 (BG05_2159) | rsmB | 2043113..2044447 (+) | 1335 | WP_033734211.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BG05_RS12585 (BG05_2160) | rlmN | 2044452..2045540 (+) | 1089 | WP_002014500.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BG05_RS12590 (BG05_2161) | - | 2045545..2046297 (+) | 753 | WP_002066780.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BG05_RS12595 (BG05_2162) | pknB | 2046306..2048279 (+) | 1974 | WP_002014502.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| BG05_RS12600 (BG05_2163) | rsgA | 2048550..2049431 (+) | 882 | WP_002014503.1 | ribosome small subunit-dependent GTPase A | - |
| BG05_RS12605 (BG05_2164) | rpe | 2049434..2050078 (+) | 645 | WP_002185059.1 | ribulose-phosphate 3-epimerase | - |
| BG05_RS12610 (BG05_2165) | - | 2050179..2050859 (+) | 681 | WP_002014506.1 | thiamine diphosphokinase | - |
| BG05_RS12615 | spoVM | 2050926..2051006 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BG05_RS12620 (BG05_2166) | rpmB | 2051080..2051268 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| BG05_RS12625 (BG05_2167) | - | 2051647..2052009 (+) | 363 | WP_002014507.1 | Asp23/Gls24 family envelope stress response protein | - |
| BG05_RS12630 (BG05_2168) | - | 2052032..2053708 (+) | 1677 | WP_002185060.1 | DAK2 domain-containing protein | - |
| BG05_RS12635 (BG05_2169) | recG | 2054133..2056181 (+) | 2049 | WP_003190964.1 | ATP-dependent DNA helicase RecG | - |
| BG05_RS12640 (BG05_2170) | fapR | 2056270..2056863 (+) | 594 | WP_002185063.1 | transcription factor FapR | - |
| BG05_RS12645 (BG05_2171) | plsX | 2056860..2057852 (+) | 993 | WP_002128828.1 | phosphate acyltransferase PlsX | - |
| BG05_RS12650 (BG05_2172) | fabD | 2057867..2058811 (+) | 945 | WP_002128825.1 | ACP S-malonyltransferase | - |
| BG05_RS12655 (BG05_2173) | fabG | 2058811..2059551 (+) | 741 | WP_002014514.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BG05_RS12660 (BG05_2174) | acpP | 2059621..2059854 (+) | 234 | WP_002014515.1 | acyl carrier protein | - |
| BG05_RS12665 (BG05_2175) | rncS | 2059913..2060650 (+) | 738 | WP_002033792.1 | ribonuclease III | - |
| BG05_RS12670 (BG05_2176) | smc | 2060799..2064368 (+) | 3570 | WP_002014517.1 | chromosome segregation protein SMC | - |
| BG05_RS12675 (BG05_2177) | ftsY | 2064383..2065372 (+) | 990 | WP_002185064.1 | signal recognition particle-docking protein FtsY | - |
| BG05_RS12680 (BG05_2178) | - | 2065505..2065837 (+) | 333 | WP_000891061.1 | putative DNA-binding protein | - |
| BG05_RS12685 (BG05_2179) | ffh | 2065850..2067199 (+) | 1350 | WP_002014519.1 | signal recognition particle protein | - |
| BG05_RS12690 (BG05_2180) | rpsP | 2067300..2067572 (+) | 273 | WP_002185065.1 | 30S ribosomal protein S16 | - |
| BG05_RS12695 (BG05_2181) | - | 2067587..2067814 (+) | 228 | WP_002088196.1 | KH domain-containing protein | - |
| BG05_RS12700 (BG05_2182) | rimM | 2067936..2068451 (+) | 516 | WP_002014521.1 | ribosome maturation factor RimM | - |
| BG05_RS12705 (BG05_2183) | trmD | 2068451..2069185 (+) | 735 | WP_002014522.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BG05_RS12710 (BG05_2184) | rplS | 2069332..2069676 (+) | 345 | WP_002185067.1 | 50S ribosomal protein L19 | - |
| BG05_RS12715 (BG05_2185) | lepB | 2069777..2070328 (+) | 552 | WP_002066791.1 | signal peptidase I | - |
| BG05_RS12720 (BG05_2186) | ylqF | 2070349..2071239 (+) | 891 | WP_002128821.1 | ribosome biogenesis GTPase YlqF | - |
| BG05_RS12725 (BG05_2187) | - | 2071295..2072068 (+) | 774 | WP_002014527.1 | ribonuclease HII | - |
| BG05_RS12730 (BG05_2188) | sucC | 2072262..2073422 (+) | 1161 | WP_002014529.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BG05_RS12735 (BG05_2189) | sucD | 2073442..2074344 (+) | 903 | WP_002033796.1 | succinate--CoA ligase subunit alpha | - |
| BG05_RS12740 (BG05_2190) | dprA | 2074433..2075227 (+) | 795 | WP_003190974.1 | DNA-processing protein DprA | - |
| BG05_RS12745 (BG05_2191) | topA | 2075429..2077507 (+) | 2079 | WP_002088184.1 | type I DNA topoisomerase | - |
| BG05_RS12750 (BG05_2192) | trmFO | 2077556..2078860 (+) | 1305 | WP_002066796.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BG05_RS12755 (BG05_2193) | xerC | 2078932..2079831 (+) | 900 | WP_078175468.1 | tyrosine recombinase XerC | - |
| BG05_RS12760 (BG05_2194) | hslV | 2079874..2080416 (+) | 543 | WP_002014538.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BG05_RS12765 (BG05_2195) | hslU | 2080439..2081830 (+) | 1392 | WP_002014539.1 | ATP-dependent protease ATPase subunit HslU | - |
| BG05_RS12770 (BG05_2196) | codY | 2081908..2082687 (+) | 780 | WP_002014541.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BG05_RS12775 (BG05_2197) | rpsB | 2083041..2083742 (+) | 702 | WP_002185070.1 | 30S ribosomal protein S2 | - |
| BG05_RS12780 (BG05_2198) | tsf | 2083825..2084712 (+) | 888 | WP_002185071.1 | translation elongation factor Ts | - |
| BG05_RS12785 (BG05_2199) | pyrH | 2084779..2085501 (+) | 723 | WP_002014544.1 | UMP kinase | - |
| BG05_RS12790 (BG05_2200) | frr | 2085505..2086062 (+) | 558 | WP_000531506.1 | ribosome recycling factor | - |
| BG05_RS12795 (BG05_2201) | - | 2086148..2086924 (+) | 777 | WP_002185072.1 | isoprenyl transferase | - |
| BG05_RS12800 (BG05_2202) | cdsA | 2086942..2087733 (+) | 792 | WP_002088171.1 | phosphatidate cytidylyltransferase | - |
| BG05_RS12805 (BG05_2203) | dxr | 2087757..2088899 (+) | 1143 | WP_002014547.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BG05_RS12810 (BG05_2204) | rseP | 2088917..2090173 (+) | 1257 | WP_002185073.1 | RIP metalloprotease RseP | - |
| BG05_RS12815 (BG05_2205) | - | 2090283..2091983 (+) | 1701 | WP_002128803.1 | proline--tRNA ligase | - |
| BG05_RS12820 (BG05_2206) | - | 2092108..2096409 (+) | 4302 | WP_002185075.1 | PolC-type DNA polymerase III | - |
| BG05_RS12825 (BG05_2207) | rimP | 2096743..2097213 (+) | 471 | WP_002088165.1 | ribosome maturation factor RimP | - |
| BG05_RS12830 (BG05_2208) | nusA | 2097231..2098337 (+) | 1107 | WP_002014554.1 | transcription termination factor NusA | - |
| BG05_RS12835 (BG05_2209) | rnpM | 2098349..2098621 (+) | 273 | WP_002088161.1 | RNase P modulator RnpM | - |
| BG05_RS12840 (BG05_2210) | - | 2098622..2098933 (+) | 312 | WP_001286519.1 | YlxQ family RNA-binding protein | - |
| BG05_RS12845 (BG05_2211) | infB | 2098938..2101004 (+) | 2067 | WP_002014558.1 | translation initiation factor IF-2 | - |
| BG05_RS12850 (BG05_2212) | - | 2101001..2101282 (+) | 282 | WP_002088157.1 | DUF503 domain-containing protein | - |
| BG05_RS12855 (BG05_2213) | rbfA | 2101298..2101654 (+) | 357 | WP_000776437.1 | 30S ribosome-binding factor RbfA | - |
| BG05_RS12860 (BG05_2214) | truB | 2101745..2102668 (+) | 924 | WP_002014562.1 | tRNA pseudouridine(55) synthase TruB | - |
| BG05_RS12865 (BG05_2215) | ribF | 2102712..2103683 (+) | 972 | WP_002128800.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BG05_RS12870 (BG05_2216) | rpsO | 2103784..2104053 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.99 Da Isoelectric Point: 4.7251
>NTDB_id=131284 BG05_RS12770 WP_002014541.1 2081908..2082687(+) (codY) [Bacillus mycoides strain ATCC 6462]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=131284 BG05_RS12770 WP_002014541.1 2081908..2082687(+) (codY) [Bacillus mycoides strain ATCC 6462]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCGGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTGGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCGGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTGGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |