Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BG07_RS22475 | Genome accession | NZ_CP009651 |
| Coordinates | 3966999..3967778 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421292.1 | Uniprot ID | - |
| Organism | Bacillus pseudomycoides strain BTZ | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3924878..3970946 | 3966999..3967778 | within | 0 |
Gene organization within MGE regions
Location: 3924878..3970946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG07_RS22275 (BG07_3981) | def | 3926640..3927116 (+) | 477 | WP_003199655.1 | peptide deformylase | - |
| BG07_RS22280 (BG07_3982) | fmt | 3927133..3928077 (+) | 945 | WP_040118957.1 | methionyl-tRNA formyltransferase | - |
| BG07_RS22285 (BG07_3983) | rsmB | 3928074..3929408 (+) | 1335 | WP_040118956.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BG07_RS22290 (BG07_3984) | rlmN | 3929413..3930501 (+) | 1089 | WP_003199662.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BG07_RS22295 (BG07_3985) | - | 3930506..3931258 (+) | 753 | WP_003199663.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BG07_RS22300 (BG07_3986) | pknB | 3931267..3933237 (+) | 1971 | WP_018780921.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| BG07_RS22305 (BG07_3987) | rsgA | 3933522..3934403 (+) | 882 | WP_003199670.1 | ribosome small subunit-dependent GTPase A | - |
| BG07_RS22310 (BG07_3988) | rpe | 3934406..3935050 (+) | 645 | WP_003199671.1 | ribulose-phosphate 3-epimerase | - |
| BG07_RS22315 (BG07_3989) | - | 3935156..3935797 (+) | 642 | WP_018764724.1 | thiamine diphosphokinase | - |
| BG07_RS22320 | spoVM | 3935864..3935944 (+) | 81 | WP_001213600.1 | stage V sporulation protein SpoVM | - |
| BG07_RS22325 (BG07_3990) | rpmB | 3936016..3936204 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| BG07_RS22330 (BG07_3991) | - | 3936583..3936945 (+) | 363 | WP_000021111.1 | Asp23/Gls24 family envelope stress response protein | - |
| BG07_RS22335 (BG07_3992) | - | 3936968..3938644 (+) | 1677 | WP_040118955.1 | DAK2 domain-containing protein | - |
| BG07_RS22340 (BG07_3993) | recG | 3939070..3941118 (+) | 2049 | WP_040118954.1 | ATP-dependent DNA helicase RecG | - |
| BG07_RS22345 (BG07_3994) | fapR | 3941210..3941803 (+) | 594 | WP_003199443.1 | transcription factor FapR | - |
| BG07_RS22350 (BG07_3995) | plsX | 3941800..3942792 (+) | 993 | WP_018780923.1 | phosphate acyltransferase PlsX | - |
| BG07_RS22355 (BG07_3996) | fabD | 3942807..3943757 (+) | 951 | WP_003208176.1 | ACP S-malonyltransferase | - |
| BG07_RS22360 (BG07_3997) | fabG | 3943751..3944491 (+) | 741 | WP_016115974.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BG07_RS22365 (BG07_3998) | acpP | 3944563..3944796 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| BG07_RS22370 (BG07_3999) | rncS | 3944856..3945593 (+) | 738 | WP_018780924.1 | ribonuclease III | - |
| BG07_RS22375 (BG07_4000) | smc | 3945742..3949311 (+) | 3570 | WP_018780925.1 | chromosome segregation protein SMC | - |
| BG07_RS22380 (BG07_4001) | ftsY | 3949326..3950315 (+) | 990 | WP_006095745.1 | signal recognition particle-docking protein FtsY | - |
| BG07_RS22385 (BG07_4002) | - | 3950595..3950927 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BG07_RS22390 (BG07_4003) | ffh | 3950940..3952289 (+) | 1350 | WP_003199457.1 | signal recognition particle protein | - |
| BG07_RS22395 (BG07_4004) | rpsP | 3952391..3952663 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BG07_RS22400 (BG07_4005) | - | 3952678..3952905 (+) | 228 | WP_016115971.1 | KH domain-containing protein | - |
| BG07_RS22405 (BG07_4006) | rimM | 3953025..3953540 (+) | 516 | WP_018764717.1 | ribosome maturation factor RimM | - |
| BG07_RS22410 (BG07_4007) | trmD | 3953540..3954274 (+) | 735 | WP_018780926.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BG07_RS22415 (BG07_4008) | rplS | 3954421..3954765 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BG07_RS22420 (BG07_4009) | lepB | 3954867..3955418 (+) | 552 | WP_016115968.1 | signal peptidase I | - |
| BG07_RS22425 (BG07_4010) | ylqF | 3955440..3956312 (+) | 873 | WP_003199468.1 | ribosome biogenesis GTPase YlqF | - |
| BG07_RS22430 (BG07_4011) | - | 3956369..3957142 (+) | 774 | WP_018780927.1 | ribonuclease HII | - |
| BG07_RS22435 (BG07_4012) | sucC | 3957336..3958496 (+) | 1161 | WP_003199470.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BG07_RS22440 (BG07_4013) | sucD | 3958516..3959418 (+) | 903 | WP_003199472.1 | succinate--CoA ligase subunit alpha | - |
| BG07_RS22445 (BG07_4014) | dprA | 3959509..3960378 (+) | 870 | WP_018780928.1 | DNA-processing protein DprA | - |
| BG07_RS22450 (BG07_4015) | topA | 3960523..3962601 (+) | 2079 | WP_018780929.1 | type I DNA topoisomerase | - |
| BG07_RS22455 (BG07_4016) | trmFO | 3962653..3963957 (+) | 1305 | WP_006095738.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BG07_RS22460 (BG07_4017) | xerC | 3964023..3964922 (+) | 900 | WP_016133222.1 | tyrosine recombinase XerC | - |
| BG07_RS22465 (BG07_4018) | hslV | 3964965..3965507 (+) | 543 | WP_003199482.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BG07_RS22470 (BG07_4019) | hslU | 3965530..3966921 (+) | 1392 | WP_003199484.1 | ATP-dependent protease ATPase subunit HslU | - |
| BG07_RS22475 (BG07_4020) | codY | 3966999..3967778 (+) | 780 | WP_000421292.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BG07_RS22480 (BG07_4021) | rpsB | 3968139..3968840 (+) | 702 | WP_018764712.1 | 30S ribosomal protein S2 | - |
| BG07_RS22485 (BG07_4022) | tsf | 3968943..3969830 (+) | 888 | WP_018764711.1 | translation elongation factor Ts | - |
| BG07_RS22490 (BG07_4023) | pyrH | 3969897..3970619 (+) | 723 | WP_003199491.1 | UMP kinase | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28801.07 Da Isoelectric Point: 4.7947
>NTDB_id=131007 BG07_RS22475 WP_000421292.1 3966999..3967778(+) (codY) [Bacillus pseudomycoides strain BTZ]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSQFTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSQFTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=131007 BG07_RS22475 WP_000421292.1 3966999..3967778(+) (codY) [Bacillus pseudomycoides strain BTZ]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCAGATACAATGTGTGAAGTAATTGAAGCAAACGTATTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCAATTC
ACCAACAAATCGAGAATGAGCGCATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCCTATTC
AACGTTACAGAAACATCTTCAAACTTAGATGTAAACAGTCAATTTACAGCATTCCCTGTAGAAAACAAAGAATTATTCGG
TCAAGGTTTAACTACAATTGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTGTTAGCGCGTCTTGGTCAAG
AATTTTTAGATGATGATTTAATTCTTGCTGAATACAGCTCAACTGTAGTAGGTATGGAAATCTTACGCGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGTAGTAAAGCGGTCGTTCAAATGGCAATTAGCTCGTTATCATACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTGAACGACAAGTTTTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCAGATACAATGTGTGAAGTAATTGAAGCAAACGTATTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCAATTC
ACCAACAAATCGAGAATGAGCGCATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCCTATTC
AACGTTACAGAAACATCTTCAAACTTAGATGTAAACAGTCAATTTACAGCATTCCCTGTAGAAAACAAAGAATTATTCGG
TCAAGGTTTAACTACAATTGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTGTTAGCGCGTCTTGGTCAAG
AATTTTTAGATGATGATTTAATTCTTGCTGAATACAGCTCAACTGTAGTAGGTATGGAAATCTTACGCGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGTAGTAAAGCGGTCGTTCAAATGGCAATTAGCTCGTTATCATACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTGAACGACAAGTTTTTACATGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |