Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AK40_RS15920 Genome accession   NZ_CP009641
Coordinates   2369993..2370772 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus 03BB108     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364993..2375772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK40_RS15895 (AK40_2413) uppS 2365737..2366513 (-) 777 WP_000971301.1 isoprenyl transferase -
  AK40_RS15900 (AK40_2414) frr 2366599..2367156 (-) 558 WP_000531503.1 ribosome recycling factor -
  AK40_RS15905 (AK40_2415) pyrH 2367159..2367881 (-) 723 WP_000042663.1 UMP kinase -
  AK40_RS15910 (AK40_2416) tsf 2367948..2368835 (-) 888 WP_001018581.1 translation elongation factor Ts -
  AK40_RS15915 (AK40_2417) rpsB 2368939..2369640 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  AK40_RS15920 (AK40_2418) codY 2369993..2370772 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AK40_RS15925 (AK40_2419) hslU 2370850..2372241 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  AK40_RS15930 (AK40_2420) hslV 2372264..2372806 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  AK40_RS15935 (AK40_2421) xerC 2372849..2373748 (-) 900 WP_001995695.1 tyrosine recombinase XerC -
  AK40_RS15940 (AK40_2422) trmFO 2373814..2375118 (-) 1305 WP_003295032.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=130887 AK40_RS15920 WP_000421288.1 2369993..2370772(-) (codY) [Bacillus cereus 03BB108]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=130887 AK40_RS15920 WP_000421288.1 2369993..2370772(-) (codY) [Bacillus cereus 03BB108]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAGGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment