Detailed information NTG0130827

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: EP23_RS16030
• Genome accession: NZ_CP009623
• Coordinates: 803133..805505 (-)
• Length: 790 a.a.
• NCBI ID: WP_060551178.1
• Uniprot ID: -
• Organism: Staphylococcus agnetis strain 908
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 798133..810505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EP23_RS16005 (EP23_03915)	-	798203..798847 (-)	645	WP_060551175.1	O-methyltransferase	-
EP23_RS16010 (EP23_03920)	-	799178..799498 (-)	321	WP_060551176.1	DUF1292 domain-containing protein	-
EP23_RS16015 (EP23_03925)	ruvX	799513..799941 (-)	429	WP_037565451.1	Holliday junction resolvase RuvX	-
EP23_RS16020 (EP23_03930)	-	799934..800206 (-)	273	WP_039645438.1	IreB family regulatory phosphoprotein	-
EP23_RS16025 (EP23_03935)	alaS	800270..802900 (-)	2631	WP_060551177.1	alanine--tRNA ligase	-
EP23_RS16030 (EP23_03940)	recD2	803133..805505 (-)	2373	WP_060551178.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EP23_RS16035 (EP23_03945)	-	805509..806183 (-)	675	WP_060551179.1	tetratricopeptide repeat protein	-
EP23_RS16040 (EP23_03950)	mnmA	806222..807298 (-)	1077	WP_420894724.1	tRNA 2-thiouridine(34) synthase MnmA	-
EP23_RS16045 (EP23_03955)	-	807334..808473 (-)	1140	WP_060551181.1	cysteine desulfurase family protein	-
EP23_RS16050 (EP23_03960)	-	808694..809704 (+)	1011	WP_060551182.1	LLM class flavin-dependent oxidoreductase	-
EP23_RS16055 (EP23_12445)	-	809756..809920 (-)	165	WP_164671788.1	hypothetical protein	-
EP23_RS16060 (EP23_03965)	-	810006..810191 (-)	186	WP_060551183.1	CsbD family protein	-

Sequence

Protein

• Length: 790 a.a.
• Molecular weight: 89188.14 Da
• Isoelectric Point: 4.6128

>NTDB_id=130827 EP23_RS16030 WP_060551178.1 803133..805505(-) (recD2) [Staphylococcus agnetis strain 908]
MENPTLFEQSYIKGNIEVILFQNSDNYYTVLKVEVEDSNEDFETMATVVGYFPNIVEGETYTFKGQVAEHPRYGKQLKAE
TFQKEIPQTRDSIVQYLSSDLFKGVGKKTAESIVDTLGDNAIQSILNDASVLEQVPKLSRAKQQQIAEQVSQNQASEQIM
IRLNELGFGAKLAMDIYKFYKDETINVIDQNPYQLVYDIRGVGFQKADQLASLVGISYTHPNRLKAGIQYIVEEICIKQG
HTYLPKDTLMTESSTLLTKQHETAIDQTMLEDVLSQLIEEQRLINDNDHIAIPSLYYSELKSSQNIYKLMHNQVFMDTFD
QSDIQLHIGEIEESNGVTYAEAQKEALEAAMQNKMMILTGGPGTGKTTVIKGIVHLYAALHGISLNYDDYGDEDYPVVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQDTKPEDILDNEIHAKLIIIDEMSMVDTWLFHQFMAAVPEDAQVVLVGDEDQ
LPSVGPGQVFKDLISSKSLKRINLKEVYRQQDGSSIIALAHNMKAGLNVDITERFHDRSFIPCHIDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHKLNKVLQDILNPIENDDTRAIHFGDIVYRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDSDAFNIGLKTEGQVRLTRQQSFLEQYFNSEETSSEVISLTEDTMYSIDPMINMQNVSPYDFMEIDNV

Nucleotide

• Length: 2373 bp

>NTDB_id=130827 EP23_RS16030 WP_060551178.1 803133..805505(-) (recD2) [Staphylococcus agnetis strain 908]
GTGGAAAACCCAACACTATTTGAACAGTCATATATCAAAGGGAATATCGAAGTCATTCTTTTTCAAAATAGTGATAATTA
CTATACGGTCCTCAAAGTAGAGGTTGAAGATTCTAATGAAGACTTTGAAACAATGGCAACAGTTGTTGGGTATTTTCCAA
ATATCGTTGAAGGCGAAACATATACTTTCAAAGGTCAAGTAGCAGAACATCCTCGGTACGGCAAACAATTAAAAGCAGAA
ACGTTTCAAAAAGAAATACCTCAAACGAGAGATTCTATTGTTCAATATTTATCAAGTGACCTGTTTAAAGGTGTGGGTAA
AAAAACAGCAGAATCCATTGTAGATACATTAGGTGACAATGCAATTCAGTCTATTTTAAATGACGCATCAGTTCTTGAAC
AAGTACCGAAATTGTCTAGAGCAAAGCAACAGCAAATTGCAGAACAAGTGTCTCAAAATCAAGCGAGTGAACAAATCATG
ATTCGCTTAAACGAACTTGGTTTTGGTGCGAAATTGGCCATGGATATTTATAAATTTTATAAGGATGAGACCATTAACGT
TATTGATCAAAATCCCTATCAACTCGTATATGATATACGTGGCGTAGGCTTTCAAAAAGCTGATCAACTTGCAAGTTTAG
TAGGTATTTCGTATACACACCCAAATCGACTTAAAGCAGGGATTCAATACATTGTAGAAGAAATCTGTATTAAACAGGGG
CATACGTATTTACCTAAAGATACGTTAATGACTGAGTCCTCTACCTTACTTACTAAACAACACGAAACAGCAATTGATCA
GACGATGCTTGAAGACGTACTTAGTCAACTTATAGAAGAGCAGCGGTTGATTAATGATAATGATCATATCGCGATACCAA
GTTTGTATTATTCAGAACTTAAAAGTAGCCAAAATATCTATAAATTAATGCATAATCAAGTATTTATGGATACGTTTGAT
CAATCAGACATTCAATTACATATTGGTGAAATTGAAGAATCAAATGGCGTGACTTATGCTGAGGCACAAAAAGAAGCACT
TGAAGCTGCAATGCAGAATAAAATGATGATTTTAACTGGTGGTCCAGGGACGGGTAAAACGACAGTAATCAAAGGGATTG
TACACCTCTATGCGGCCTTACATGGTATTTCTTTAAATTATGACGATTACGGAGATGAAGATTACCCCGTGGTCCTCGCA
GCACCTACTGGTCGTGCATCAAAAAGGCTACATGATGCGACGGGTCTTGAGGCTATGACGATTCATCGCTTGATAGGTTG
GAATCAAGATACCAAGCCAGAAGATATTCTTGATAATGAAATTCATGCAAAGCTTATCATTATTGATGAAATGTCAATGG
TGGATACATGGCTATTTCATCAATTTATGGCAGCAGTTCCTGAAGATGCACAAGTTGTATTAGTTGGTGATGAGGACCAA
TTACCATCAGTAGGTCCAGGACAAGTATTTAAAGATTTAATCTCATCAAAATCATTAAAGCGCATTAATTTAAAAGAAGT
ATACCGCCAACAAGATGGTTCAAGTATTATTGCACTTGCTCATAACATGAAGGCGGGTTTAAACGTAGACATTACCGAGC
GGTTTCATGATCGATCCTTTATTCCTTGTCATATTGATCAAATTCCAGAAGTTGTTCGTAAAGTCGTAACAAATGCCGTG
AGTAAAGGTTATGATATGTCTGATATTCAAGTACTTGCACCAATGTACCGTGGGAATGCGGGTATTCATAAGCTCAATAA
AGTCCTACAAGATATTTTAAATCCAATTGAAAACGATGATACAAGAGCAATACACTTTGGAGATATTGTGTACCGAAAAG
GTGACAAAGTACTTCAACTTGTTAATCGACCGAATGATAATATTTTTAATGGAGATATTGGTGTCATTGTTGGTATATTT
TGGGCGAAGGAAAATGCACTGAACAAAGATGTGGTCATTGTGGATTACGAAGGTAATGAGATTACGTATTTAAAATCGGA
TCTAACAGAATTAACACATGCGTATTGTACGTCAATTCATAAAGCGCAAGGGTCAGAATTTCCAATCGTCATTATGCCGA
TAGTCAAGCAATATTTTCGGATGCTTCAAAAGCCAATTCTTTATACTGGATTAACCCGTGCAAAGCAATCACTTGTATTT
TTAGGAGATTCAGATGCTTTCAATATTGGTTTGAAAACGGAAGGCCAAGTGAGACTCACGCGACAACAATCCTTTTTAGA
ACAATATTTTAATTCTGAAGAGACATCGAGTGAAGTCATTTCATTAACTGAAGACACAATGTATAGCATTGATCCAATGA
TTAATATGCAAAATGTAAGCCCATACGATTTTATGGAAATTGACAATGTTTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

• AAA domain (AAA_30) (339-544)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	48.858	99.747	0.487