Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IX92_RS15530 Genome accession   NZ_CP009617
Coordinates   3320860..3321564 (-) Length   234 a.a.
NCBI ID   WP_043009546.1    Uniprot ID   A0AAN0VYB1
Organism   Vibrio coralliilyticus strain RE98     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3315860..3326564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS15510 (IX92_15510) recG 3316474..3318552 (+) 2079 WP_043009544.1 ATP-dependent DNA helicase RecG -
  IX92_RS15515 (IX92_15515) cysQ 3318645..3319472 (-) 828 WP_043009545.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IX92_RS15520 (IX92_15520) nudE 3319499..3320047 (-) 549 WP_019276595.1 ADP compounds hydrolase NudE -
  IX92_RS15525 (IX92_15525) nfuA 3320179..3320766 (-) 588 WP_006957194.1 Fe-S biogenesis protein NfuA -
  IX92_RS15530 (IX92_15530) comF 3320860..3321564 (-) 705 WP_043009546.1 phosphoribosyltransferase family protein Machinery gene
  IX92_RS15535 (IX92_15535) bioH 3321623..3322420 (+) 798 WP_006957197.1 pimeloyl-ACP methyl ester esterase BioH -
  IX92_RS15540 (IX92_15540) - 3322530..3323000 (+) 471 WP_006957199.1 hypothetical protein -
  IX92_RS15545 (IX92_15545) - 3323073..3325400 (-) 2328 WP_043009547.1 Tex family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27163.68 Da        Isoelectric Point: 8.4864

>NTDB_id=130793 IX92_RS15530 WP_043009546.1 3320860..3321564(-) (comF) [Vibrio coralliilyticus strain RE98]
MLTDWIKKHTAYLLPSHCDLCQMAIGSQAAHPLFCCFCLRRFAPVPRCRRCGLVTPEYVEMCGECLVAPPLWTHLYCVGD
YQPPLSSYVHRLKYEGQYWQAKTLSLLLVSRIDTRPDLITFVPLHWRRYCYRGYNQSQHLAWQIGRELNVPCEALFKKKR
ATERQQGMDKKQRKENVCQAFHLRKSINFEHVAIVDDVLTTGSTVHQLCELLLDAGVKTIDIYCICRTPEPSSR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=130793 IX92_RS15530 WP_043009546.1 3320860..3321564(-) (comF) [Vibrio coralliilyticus strain RE98]
ATGTTAACCGATTGGATTAAGAAACACACAGCCTACCTGTTACCCAGTCATTGCGATTTGTGCCAGATGGCGATCGGATC
GCAAGCGGCGCACCCCTTATTCTGCTGTTTCTGTCTGCGACGTTTTGCGCCAGTTCCTCGCTGCAGACGATGTGGCTTGG
TGACCCCTGAGTACGTCGAAATGTGTGGGGAATGTTTAGTTGCCCCGCCATTGTGGACGCACTTGTATTGTGTCGGAGAC
TATCAACCGCCGCTATCGAGTTACGTTCACCGACTTAAGTACGAAGGTCAGTACTGGCAGGCTAAAACCTTGTCTTTGCT
GTTGGTGTCACGCATCGACACTCGACCAGACCTGATTACTTTTGTCCCCTTGCACTGGCGTCGTTACTGTTATCGAGGCT
ACAACCAAAGTCAGCATCTGGCATGGCAAATTGGTCGAGAGCTGAATGTGCCTTGTGAGGCTCTATTTAAGAAAAAGCGT
GCAACGGAAAGGCAACAAGGAATGGATAAAAAGCAGCGTAAGGAGAATGTGTGTCAGGCTTTTCATCTAAGAAAGTCGAT
AAATTTCGAGCATGTCGCTATTGTCGATGATGTGCTAACTACAGGCAGTACCGTGCATCAATTATGTGAATTATTGCTCG
ATGCTGGAGTGAAAACCATTGATATTTATTGCATTTGTCGCACTCCTGAACCTTCTAGCCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

51.293

99.145

0.509
  comF Vibrio campbellii strain DS40M4

46.053

97.436

0.449

Multiple sequence alignment