Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BG11_RS29160 | Genome accession | NZ_CP009596 |
| Coordinates | 5211959..5212738 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus cereus strain 3a | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 5173135..5247060 | 5211959..5212738 | within | 0 |
Gene organization within MGE regions
Location: 5173135..5247060
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG11_RS28970 (BG11_5371) | rsmB | 5173293..5174627 (+) | 1335 | WP_001249652.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BG11_RS28975 (BG11_5372) | rlmN | 5174632..5175720 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BG11_RS28980 (BG11_5373) | - | 5175725..5176477 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BG11_RS28985 (BG11_5374) | prkC | 5176486..5178459 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| BG11_RS28990 (BG11_5375) | rsgA | 5178728..5179609 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| BG11_RS28995 (BG11_5376) | rpe | 5179612..5180256 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| BG11_RS29000 (BG11_5377) | - | 5180356..5181036 (+) | 681 | WP_033688055.1 | thiamine diphosphokinase | - |
| BG11_RS29005 | spoVM | 5181103..5181183 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BG11_RS29010 (BG11_5378) | rpmB | 5181257..5181445 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| BG11_RS29015 (BG11_5379) | - | 5181824..5182186 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| BG11_RS29020 (BG11_5380) | - | 5182209..5183885 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| BG11_RS29025 (BG11_5381) | recG | 5184175..5186223 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| BG11_RS29030 (BG11_5382) | fapR | 5186312..5186905 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| BG11_RS29035 (BG11_5383) | plsX | 5186902..5187894 (+) | 993 | WP_000684108.1 | phosphate acyltransferase PlsX | - |
| BG11_RS29040 (BG11_5384) | fabD | 5187909..5188853 (+) | 945 | WP_000516948.1 | ACP S-malonyltransferase | - |
| BG11_RS29045 (BG11_5385) | fabG | 5188853..5189593 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BG11_RS29050 (BG11_5386) | acpP | 5189663..5189896 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| BG11_RS29055 (BG11_5387) | rncS | 5189955..5190692 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| BG11_RS29060 (BG11_5388) | smc | 5190839..5194408 (+) | 3570 | WP_000478986.1 | chromosome segregation protein SMC | - |
| BG11_RS29065 (BG11_5389) | ftsY | 5194424..5195413 (+) | 990 | WP_000007651.1 | signal recognition particle-docking protein FtsY | - |
| BG11_RS29070 (BG11_5390) | - | 5195547..5195879 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BG11_RS29075 (BG11_5391) | ffh | 5195892..5197241 (+) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| BG11_RS29080 (BG11_5392) | rpsP | 5197342..5197614 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BG11_RS29085 (BG11_5393) | - | 5197629..5197856 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| BG11_RS29090 (BG11_5394) | rimM | 5197977..5198492 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| BG11_RS29095 (BG11_5395) | trmD | 5198492..5199226 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BG11_RS29100 (BG11_5396) | rplS | 5199373..5199717 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BG11_RS29105 (BG11_5397) | lepB | 5199819..5200370 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| BG11_RS29110 (BG11_5398) | ylqF | 5200391..5201281 (+) | 891 | WP_000236696.1 | ribosome biogenesis GTPase YlqF | - |
| BG11_RS29115 (BG11_5399) | rnhB | 5201333..5202106 (+) | 774 | WP_001174714.1 | ribonuclease HII | - |
| BG11_RS29120 (BG11_5400) | sucC | 5202300..5203460 (+) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BG11_RS29125 (BG11_5401) | sucD | 5203480..5204382 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| BG11_RS29130 (BG11_5402) | dprA | 5204470..5205339 (+) | 870 | WP_000818033.1 | DNA-processing protein DprA | - |
| BG11_RS29135 (BG11_5403) | topA | 5205484..5207562 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| BG11_RS29140 (BG11_5404) | trmFO | 5207613..5208917 (+) | 1305 | WP_001991958.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BG11_RS29145 (BG11_5405) | xerC | 5208983..5209882 (+) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| BG11_RS29150 (BG11_5406) | hslV | 5209925..5210467 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BG11_RS29155 (BG11_5407) | hslU | 5210490..5211881 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| BG11_RS29160 (BG11_5408) | codY | 5211959..5212738 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BG11_RS29165 (BG11_5409) | rpsB | 5213089..5213790 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| BG11_RS29170 (BG11_5410) | tsf | 5213894..5214781 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| BG11_RS29175 (BG11_5411) | pyrH | 5214848..5215570 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| BG11_RS29180 (BG11_5412) | frr | 5215573..5216130 (+) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| BG11_RS29185 (BG11_5413) | uppS | 5216216..5216992 (+) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| BG11_RS29190 (BG11_5414) | cdsA | 5217010..5217801 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| BG11_RS29195 (BG11_5415) | dxr | 5217825..5218967 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BG11_RS29200 (BG11_5416) | rseP | 5218984..5220240 (+) | 1257 | WP_001090229.1 | RIP metalloprotease RseP | - |
| BG11_RS29205 (BG11_5417) | - | 5220350..5222050 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| BG11_RS29210 (BG11_5418) | - | 5222175..5226476 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| BG11_RS29215 (BG11_5419) | rimP | 5226809..5227279 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| BG11_RS29220 (BG11_5420) | nusA | 5227297..5228403 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| BG11_RS29225 (BG11_5421) | rnpM | 5228415..5228687 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| BG11_RS29230 (BG11_5422) | - | 5228688..5228999 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| BG11_RS29235 (BG11_5423) | infB | 5229004..5231064 (+) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| BG11_RS29240 (BG11_5424) | - | 5231061..5231342 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| BG11_RS29245 (BG11_5425) | rbfA | 5231358..5231714 (+) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| BG11_RS29250 (BG11_5426) | truB | 5231801..5232724 (+) | 924 | WP_000399337.1 | tRNA pseudouridine(55) synthase TruB | - |
| BG11_RS29255 (BG11_5427) | ribF | 5232768..5233739 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BG11_RS29260 (BG11_5428) | rpsO | 5233840..5234109 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| BG11_RS29265 (BG11_5429) | pnp | 5234270..5236408 (+) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| BG11_RS29270 (BG11_5430) | - | 5236560..5237459 (+) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| BG11_RS29275 (BG11_5431) | - | 5237546..5238787 (+) | 1242 | WP_000592985.1 | M16 family metallopeptidase | - |
| BG11_RS29280 (BG11_5432) | - | 5238914..5239165 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| BG11_RS29285 (BG11_5433) | dpaA | 5239440..5240342 (+) | 903 | WP_000954728.1 | dipicolinic acid synthetase subunit A | - |
| BG11_RS29290 (BG11_5434) | dpaB | 5240339..5240938 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| BG11_RS29295 (BG11_5435) | asd | 5241089..5242135 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| BG11_RS29300 (BG11_5436) | dapG | 5242159..5243391 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| BG11_RS29305 (BG11_5437) | dapA | 5243403..5244281 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BG11_RS29315 (BG11_5438) | - | 5245047..5246717 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=130491 BG11_RS29160 WP_000421288.1 5211959..5212738(+) (codY) [Bacillus cereus strain 3a]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=130491 BG11_RS29160 WP_000421288.1 5211959..5212738(+) (codY) [Bacillus cereus strain 3a]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |