Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACX61_RS06075 Genome accession   NZ_CP012006
Coordinates   1277009..1278766 (+) Length   585 a.a.
NCBI ID   WP_034129353.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab04-mff     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1272009..1283766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACX61_RS06055 (ACX61_06055) - 1272907..1273776 (+) 870 WP_000117594.1 PhzF family phenazine biosynthesis protein -
  ACX61_RS06060 (ACX61_06060) - 1273831..1274610 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  ACX61_RS06065 (ACX61_06065) tsaA 1274715..1275443 (+) 729 WP_005119947.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ACX61_RS06070 (ACX61_06070) - 1275453..1276721 (-) 1269 WP_001052944.1 DUF4010 domain-containing protein -
  ACX61_RS06075 (ACX61_06075) pilB 1277009..1278766 (+) 1758 WP_034129353.1 GspE/PulE family protein Machinery gene
  ACX61_RS06080 (ACX61_06080) - 1278848..1279207 (+) 360 WP_000783086.1 NirD/YgiW/YdeI family stress tolerance protein -
  ACX61_RS06085 (ACX61_06085) - 1279315..1279977 (+) 663 WP_001221456.1 response regulator transcription factor -
  ACX61_RS06090 (ACX61_06090) - 1279974..1281332 (+) 1359 WP_001257352.1 cell wall metabolism sensor histidine kinase WalK -
  ACX61_RS06095 (ACX61_06095) hemP 1281398..1281568 (-) 171 WP_000993415.1 hemin uptake protein HemP -
  ACX61_RS06100 (ACX61_06100) - 1281705..1282604 (+) 900 WP_001125745.1 NUDIX domain-containing protein -
  ACX61_RS06105 (ACX61_06105) - 1282626..1283177 (-) 552 WP_000913443.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66901.71 Da        Isoelectric Point: 7.0339

>NTDB_id=130211 ACX61_RS06075 WP_034129353.1 1277009..1278766(+) (pilB) [Acinetobacter baumannii strain Ab04-mff]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSVLTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKENGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGTRKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=130211 ACX61_RS06075 WP_034129353.1 1277009..1278766(+) (pilB) [Acinetobacter baumannii strain Ab04-mff]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTCTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGTTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATTCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGGATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCTAGTGACATTCACATGGAACCACGTAAAGAAAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCGGTGATTTCTCGGATTAAAATTTTAGGGCGACTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACACCGAAAGGACAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTACTAGTACGTTCTTTTCAGCAATTAGGTTTC
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAGGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACACGATTTAGGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAACTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTATTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(209-474)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.162

100

0.376

Multiple sequence alignment