Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACX60_RS06090 Genome accession   NZ_CP012004
Coordinates   1316276..1318033 (+) Length   585 a.a.
NCBI ID   WP_001020917.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17978-mff     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1311276..1323033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACX60_RS06070 (ACX60_06070) - 1312174..1313043 (+) 870 WP_000117587.1 PhzF family phenazine biosynthesis protein -
  ACX60_RS06075 (ACX60_06075) - 1313098..1313877 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  ACX60_RS06080 (ACX60_06080) tsaA 1313982..1314710 (+) 729 WP_005109720.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ACX60_RS06085 (ACX60_06085) - 1314720..1315988 (-) 1269 WP_001052949.1 DUF4010 domain-containing protein -
  ACX60_RS06090 (ACX60_06090) pilB 1316276..1318033 (+) 1758 WP_001020917.1 GspE/PulE family protein Machinery gene
  ACX60_RS06095 (ACX60_06095) - 1318115..1318474 (+) 360 WP_000781557.1 NirD/YgiW/YdeI family stress tolerance protein -
  ACX60_RS06100 (ACX60_06100) - 1318582..1319244 (+) 663 WP_001221454.1 response regulator transcription factor -
  ACX60_RS06105 (ACX60_06105) - 1319241..1320599 (+) 1359 WP_001257353.1 cell wall metabolism sensor histidine kinase WalK -
  ACX60_RS06110 (ACX60_06110) hemP 1320665..1320835 (-) 171 WP_000993415.1 hemin uptake protein HemP -
  ACX60_RS06115 (ACX60_06115) - 1320972..1321871 (+) 900 WP_001125745.1 NUDIX domain-containing protein -
  ACX60_RS06120 (ACX60_06120) - 1321893..1322444 (-) 552 WP_000913439.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66856.68 Da        Isoelectric Point: 7.0094

>NTDB_id=130136 ACX60_RS06090 WP_001020917.1 1316276..1318033(+) (pilB) [Acinetobacter baumannii strain ATCC 17978-mff]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDVAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMESRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPNCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRCQTKKESVELL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=130136 ACX60_RS06090 WP_001020917.1 1316276..1318033(+) (pilB) [Acinetobacter baumannii strain ATCC 17978-mff]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGGATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAGAAAGACGTAGCTCATGACCGTGATAACAAAGGTGTAGAAGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTAGTAGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAATCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAATATGCCTTCAAATACTCTGACCGCCGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGTTTAAAAACACGTACGCCGAAAGGACAAGAAACCGAGCTACGTTTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTACTAGTACGTTCTTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACCACAACGCTATATTCTTCTTTAAAGCAGCTCGCAACCGAGCAGGTCAATGTTTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCAAATATGGCCATTCAAGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACACACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGTG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTGGCACAGCGCTTAGTGCGTAAGCTTTGCCCAAACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGATGCCAAACTAAAAAAGAAAGTGTAGAGCTTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTATTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(209-474)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.437

100

0.379