Detailed information NTG0129740

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: AB831_RS11050
• Genome accession: NZ_CP011884
• Coordinates: 2155486..2156775 (-)
• Length: 429 a.a.
• NCBI ID: WP_202987982.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain MAVP-Q
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2150486..2161775

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB831_RS11025 (AB831_10280)	bioA	2150545..2151825 (+)	1281	WP_021449296.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
AB831_RS11030 (AB831_10285)	-	2151895..2152161 (-)	267	WP_021449297.1	DksA/TraR family C4-type zinc finger protein	-
AB831_RS11035 (AB831_10290)	-	2152302..2153015 (-)	714	WP_021449298.1	hypothetical protein	-
AB831_RS11040 (AB831_10295)	-	2153015..2154001 (-)	987	WP_021449299.1	peptidoglycan-binding domain-containing protein	-
AB831_RS11045 (AB831_10300)	serS	2154087..2155394 (-)	1308	WP_005495761.1	serine--tRNA ligase	-
AB831_RS11050 (AB831_10305)	rarA	2155486..2156775 (-)	1290	WP_202987982.1	replication-associated recombination protein A	Machinery gene
AB831_RS11055 (AB831_10310)	lolA	2156842..2157468 (-)	627	WP_021449301.1	outer membrane lipoprotein chaperone LolA	-
AB831_RS11060 (AB831_10315)	-	2157543..2160629 (-)	3087	WP_021449302.1	DNA translocase FtsK	-
AB831_RS11065 (AB831_10320)	lrp	2160782..2161276 (-)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47550.73 Da
• Isoelectric Point: 5.8532

>NTDB_id=129740 AB831_RS11050 WP_202987982.1 2155486..2156775(-) (rarA) [Vibrio parahaemolyticus strain MAVP-Q]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPSSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=129740 AB831_RS11050 WP_202987982.1 2155486..2156775(-) (rarA) [Vibrio parahaemolyticus strain MAVP-Q]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTAACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCAGCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385