Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BF26_RS23940 | Genome accession | NZ_CP009476 |
| Coordinates | 4345529..4346308 (+) | Length | 259 a.a. |
| NCBI ID | WP_033649276.1 | Uniprot ID | - |
| Organism | Bacillus anthracis strain Pasteur | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4306706..4380630 | 4345529..4346308 | within | 0 |
Gene organization within MGE regions
Location: 4306706..4380630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BF26_RS23750 (BF26_4664) | rsmB | 4306864..4308198 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BF26_RS23755 (BF26_4665) | rlmN | 4308203..4309291 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BF26_RS23760 (BF26_4666) | - | 4309296..4310048 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BF26_RS23765 (BF26_4667) | prkC | 4310057..4312030 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| BF26_RS23770 (BF26_4668) | rsgA | 4312299..4313180 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| BF26_RS23775 (BF26_4669) | rpe | 4313183..4313827 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| BF26_RS23780 (BF26_4670) | - | 4313927..4314607 (+) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| BF26_RS23785 | spoVM | 4314674..4314754 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BF26_RS23790 (BF26_4671) | rpmB | 4314827..4315015 (-) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| BF26_RS23795 (BF26_4672) | - | 4315394..4315756 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| BF26_RS23800 (BF26_4673) | - | 4315779..4317455 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| BF26_RS23805 (BF26_4674) | recG | 4317745..4319793 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| BF26_RS23810 (BF26_4675) | fapR | 4319882..4320475 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| BF26_RS23815 (BF26_4676) | plsX | 4320472..4321464 (+) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| BF26_RS23820 (BF26_4677) | fabD | 4321479..4322423 (+) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| BF26_RS23825 (BF26_4678) | fabG | 4322423..4323163 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BF26_RS23830 (BF26_4679) | acpP | 4323233..4323466 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| BF26_RS23835 (BF26_4680) | rncS | 4323525..4324262 (+) | 738 | WP_017651025.1 | ribonuclease III | - |
| BF26_RS23840 (BF26_4681) | smc | 4324409..4327978 (+) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| BF26_RS23845 (BF26_4682) | ftsY | 4327994..4328983 (+) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| BF26_RS23850 (BF26_4683) | - | 4329117..4329449 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BF26_RS23855 (BF26_4684) | ffh | 4329462..4330811 (+) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| BF26_RS23860 (BF26_4685) | rpsP | 4330912..4331184 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BF26_RS23865 (BF26_4686) | - | 4331199..4331426 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| BF26_RS23870 (BF26_4687) | rimM | 4331547..4332062 (+) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| BF26_RS23875 (BF26_4688) | trmD | 4332062..4332796 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BF26_RS23880 (BF26_4689) | rplS | 4332943..4333287 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BF26_RS23885 (BF26_4690) | lepB | 4333389..4333940 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| BF26_RS23890 (BF26_4691) | ylqF | 4333961..4334851 (+) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| BF26_RS23895 (BF26_4692) | rnhB | 4334903..4335676 (+) | 774 | WP_017651024.1 | ribonuclease HII | - |
| BF26_RS23900 (BF26_4693) | sucC | 4335870..4337030 (+) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BF26_RS23905 (BF26_4694) | sucD | 4337051..4337953 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| BF26_RS23910 (BF26_4695) | dprA | 4338275..4338909 (+) | 635 | Protein_4479 | DNA-processing protein DprA | - |
| BF26_RS23915 (BF26_4696) | topA | 4339054..4341132 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| BF26_RS23920 (BF26_4697) | trmFO | 4341183..4342487 (+) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BF26_RS23925 (BF26_4698) | xerC | 4342553..4343452 (+) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| BF26_RS23930 (BF26_4699) | hslV | 4343495..4344037 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BF26_RS23935 (BF26_4700) | hslU | 4344060..4345451 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| BF26_RS23940 (BF26_4701) | codY | 4345529..4346308 (+) | 780 | WP_033649276.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BF26_RS23945 (BF26_4702) | rpsB | 4346658..4347359 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| BF26_RS23950 (BF26_4703) | tsf | 4347463..4348350 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| BF26_RS23955 (BF26_4704) | pyrH | 4348417..4349139 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| BF26_RS23960 (BF26_4705) | frr | 4349142..4349699 (+) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| BF26_RS23965 (BF26_4706) | uppS | 4349785..4350561 (+) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| BF26_RS23970 (BF26_4707) | cdsA | 4350579..4351370 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| BF26_RS23975 (BF26_4708) | dxr | 4351394..4352536 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BF26_RS23980 (BF26_4709) | rseP | 4352553..4353809 (+) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| BF26_RS23985 (BF26_4710) | - | 4353919..4355619 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| BF26_RS23990 (BF26_4711) | - | 4355744..4360045 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| BF26_RS23995 (BF26_4712) | rimP | 4360378..4360848 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| BF26_RS24000 (BF26_4713) | nusA | 4360866..4361972 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| BF26_RS24005 (BF26_4714) | rnpM | 4361984..4362256 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| BF26_RS24010 (BF26_4715) | - | 4362257..4362568 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| BF26_RS24015 (BF26_4716) | infB | 4362573..4364633 (+) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| BF26_RS24020 (BF26_4717) | - | 4364630..4364911 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| BF26_RS24025 (BF26_4718) | rbfA | 4364927..4365283 (+) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| BF26_RS24030 (BF26_4719) | truB | 4365370..4366293 (+) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| BF26_RS24035 (BF26_4720) | ribF | 4366337..4367308 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BF26_RS24040 (BF26_4721) | rpsO | 4367409..4367678 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| BF26_RS24045 (BF26_4722) | pnp | 4367839..4369977 (+) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| BF26_RS24050 (BF26_4723) | - | 4370129..4371028 (+) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| BF26_RS24055 (BF26_4724) | - | 4371115..4372356 (+) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| BF26_RS24060 (BF26_4725) | - | 4372483..4372734 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| BF26_RS24065 (BF26_4726) | dpaA | 4373009..4373911 (+) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| BF26_RS24070 (BF26_4727) | dpaB | 4373908..4374507 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| BF26_RS24075 (BF26_4728) | asd | 4374658..4375704 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| BF26_RS24080 (BF26_4729) | dapG | 4375728..4376960 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| BF26_RS24085 (BF26_4730) | dapA | 4376972..4377850 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BF26_RS24095 (BF26_4731) | - | 4378616..4380286 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28760.02 Da Isoelectric Point: 4.7947
>NTDB_id=129729 BF26_RS23940 WP_033649276.1 4345529..4346308(+) (codY) [Bacillus anthracis strain Pasteur]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGVLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGVLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=129729 BF26_RS23940 WP_033649276.1 4345529..4346308(+) (codY) [Bacillus anthracis strain Pasteur]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTGTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTGTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
80.695 |
100 |
0.807 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |