Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ABU16_RS12940 Genome accession   NZ_CP011882
Coordinates   2477859..2478308 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain TO-A JPC     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2472859..2483308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS12900 (ABU16_2556) ctaE 2472876..2473499 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ABU16_RS12905 (ABU16_2557) ctaF 2473502..2473834 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ABU16_RS12910 (ABU16_2558) ctaG 2473861..2474754 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  ABU16_RS12915 (ABU16_2559) ylbA 2474786..2475148 (-) 363 WP_003232238.1 YugN family protein -
  ABU16_RS12920 (ABU16_2560) ylbB 2475288..2475734 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ABU16_RS12925 (ABU16_2561) ylbC 2475818..2476858 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  ABU16_RS12930 (ABU16_2562) ylbD 2477090..2477488 (+) 399 WP_003232233.1 YlbD family protein -
  ABU16_RS12935 (ABU16_2563) ylbE 2477504..2477743 (+) 240 WP_003232231.1 YlbE-like family protein -
  ABU16_RS12940 (ABU16_2564) ylbF 2477859..2478308 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ABU16_RS12945 (ABU16_2565) ylbG 2478363..2478635 (+) 273 WP_009967171.1 YlbG family protein -
  ABU16_RS12950 (ABU16_2566) rsmD 2478958..2479512 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABU16_RS12955 (ABU16_2567) coaD 2479517..2480002 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ABU16_RS12960 (ABU16_2568) spoVV 2480013..2481239 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  ABU16_RS12965 (ABU16_2569) ylbK 2481420..2482202 (+) 783 WP_003232221.1 patatin family protein -
  ABU16_RS12970 (ABU16_2570) sepM 2482204..2483229 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=129624 ABU16_RS12940 WP_003221370.1 2477859..2478308(+) (ylbF) [Bacillus subtilis strain TO-A JPC]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=129624 ABU16_RS12940 WP_003221370.1 2477859..2478308(+) (ylbF) [Bacillus subtilis strain TO-A JPC]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment