Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LA59_RS01695 Genome accession   NZ_CP009467
Coordinates   358334..359059 (-) Length   241 a.a.
NCBI ID   WP_069686748.1    Uniprot ID   -
Organism   Vibrio harveyi strain ATCC 33843 (392 [MAV])     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353334..364059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA59_RS01670 (LA59_01665) - 354491..354982 (+) 492 WP_005448492.1 type II secretion system protein M -
  LA59_RS01675 (LA59_01670) - 354984..355745 (+) 762 WP_069686747.1 type II secretion system protein N -
  LA59_RS01680 (LA59_01675) cysQ 356035..356862 (-) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LA59_RS01685 (LA59_01680) nudE 356910..357476 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  LA59_RS01690 (LA59_01685) nfuA 357652..358236 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  LA59_RS01695 (LA59_01690) comF 358334..359059 (-) 726 WP_069686748.1 ComF family protein Machinery gene
  LA59_RS01700 (LA59_01695) bioH 359144..359908 (+) 765 WP_069687545.1 pimeloyl-ACP methyl ester esterase BioH -
  LA59_RS01705 (LA59_01700) - 360045..360509 (+) 465 WP_069686749.1 ATP-dependent Lon protease -
  LA59_RS01710 (LA59_01705) - 360613..362934 (-) 2322 WP_069686750.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27650.73 Da        Isoelectric Point: 8.5728

>NTDB_id=129575 LA59_RS01695 WP_069686748.1 358334..359059(-) (comF) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYNFPLSQQVQRFKDHGEAWQVSALTQLLAERIEQPAPVITSVPIHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=129575 LA59_RS01695 WP_069686748.1 358334..359059(-) (comF) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATAACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTGCGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCATTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.701

100

0.917
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469

Multiple sequence alignment