Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BF31_RS15865 Genome accession   NZ_CP009464
Coordinates   2681324..2682103 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus anthracis strain SK-102     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2676324..2687103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF31_RS15845 (BF31_2893) trmFO 2676978..2678282 (+) 1305 WP_003161605.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BF31_RS15850 (BF31_2894) xerC 2678348..2679247 (+) 900 WP_001101226.1 tyrosine recombinase XerC -
  BF31_RS15855 (BF31_2895) hslV 2679290..2679832 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  BF31_RS15860 (BF31_2896) hslU 2679855..2681246 (+) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  BF31_RS15865 (BF31_2897) codY 2681324..2682103 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BF31_RS15870 (BF31_2898) rpsB 2682453..2683154 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  BF31_RS15875 (BF31_2899) tsf 2683258..2684145 (+) 888 WP_001018581.1 translation elongation factor Ts -
  BF31_RS15880 (BF31_2900) pyrH 2684212..2684934 (+) 723 WP_000042663.1 UMP kinase -
  BF31_RS15885 (BF31_2901) frr 2684937..2685494 (+) 558 WP_000531503.1 ribosome recycling factor -
  BF31_RS15890 (BF31_2902) uppS 2685580..2686356 (+) 777 WP_000971303.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=129553 BF31_RS15865 WP_000421288.1 2681324..2682103(+) (codY) [Bacillus anthracis strain SK-102]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=129553 BF31_RS15865 WP_000421288.1 2681324..2682103(+) (codY) [Bacillus anthracis strain SK-102]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment