Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB406_RS11490 Genome accession   NZ_CP011859
Coordinates   2362425..2363702 (-) Length   425 a.a.
NCBI ID   WP_079208581.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain HXb2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2357425..2368702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB406_RS11465 (AB406_2305) - 2358350..2359675 (+) 1326 Protein_2241 TrkH family potassium uptake protein -
  AB406_RS11470 (AB406_2306) - 2359682..2360374 (+) 693 WP_014938997.1 TrkA family potassium uptake protein -
  AB406_RS11475 (AB406_2307) - 2360378..2360998 (+) 621 WP_079208424.1 CoA pyrophosphatase -
  AB406_RS11480 (AB406_2308) - 2361027..2361833 (+) 807 WP_052911259.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  AB406_RS11485 (AB406_2309) - 2361817..2362428 (+) 612 WP_079208426.1 L-threonylcarbamoyladenylate synthase -
  AB406_RS11490 (AB406_2310) rarA 2362425..2363702 (-) 1278 WP_079208581.1 replication-associated recombination protein A Machinery gene
  AB406_RS11495 yidD 2363782..2364036 (+) 255 WP_079208428.1 membrane protein insertion efficiency factor YidD -
  AB406_RS11500 (AB406_2312) lgt 2364043..2364894 (+) 852 WP_079208430.1 prolipoprotein diacylglyceryl transferase -
  AB406_RS11505 (AB406_2313) mscL 2365035..2365406 (+) 372 WP_004917723.1 large conductance mechanosensitive channel protein MscL -
  AB406_RS11510 (AB406_2314) - 2365481..2366137 (+) 657 WP_064969819.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB406_RS11515 (AB406_2315) - 2366174..2367358 (+) 1185 WP_013447219.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47566.22 Da        Isoelectric Point: 6.7064

>NTDB_id=129531 AB406_RS11490 WP_079208581.1 2362425..2363702(-) (rarA) [Riemerella anatipestifer strain HXb2]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSALLSRSQVYVLKPLSYE
KLEELATIAVARFNQDENTDFVIEDNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSEAILKVLQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTIANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEAMAMAKKTTHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGNFVSQEFFPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=129531 AB406_RS11490 WP_079208581.1 2362425..2363702(-) (rarA) [Riemerella anatipestifer strain HXb2]
TTGAATTCAAATATCCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTAAAA
GAGGTAAGAGAAGTGATAGATGATGCCAAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAACAAATCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGATTCTGATAGGAGCTACTA
CTGAAAATCCTAGTTTTGAAGTGGTTTCGGCATTATTATCTCGCTCTCAAGTTTATGTTTTAAAACCATTGAGTTACGAA
AAATTGGAAGAATTGGCTACCATTGCGGTCGCTCGTTTCAATCAAGATGAAAATACAGATTTTGTTATCGAAGATAATCA
AGGTTTTATACAGTATTCGGGAGGCGATGCTAGAAAACTCATCAATTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGTT
CTGGACAAAACCAGTTATCTAGTGAGGCTATTCTGAAAGTTTTACAAGAAACTGTACCTGTTTATGATAAAAATGGAGAA
CAACATTACGATGTAATTTCAGCTTTTATAAAATCCATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTGGGTAG
AATGCTTGTAGGAGGTGAAGATATTAAATTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGTTTGGCTA
ATCCTAACGCTCTCACAATAGCTAATAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCCGAATCTCGTATTATTCTA
AGTGAATGTGTAATTTATCTAGCAGCTTCACCTAAGAGCAACTCGGCGTATCAAGCCATCAATGAGGCGATGGCGATGGC
GAAAAAAACGACTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTACGAGGGAAATTTTGTATCACAAGAATTTTTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-153)

AAA C-terminal domain (AAA_assoc_2)

(189-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.447

94.824

0.384