Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABA10_RS04485 Genome accession   NZ_CP011534
Coordinates   883194..885008 (+) Length   604 a.a.
NCBI ID   WP_047182298.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 878194..890008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS04475 (ABA10_04475) - 878731..881064 (+) 2334 WP_043940076.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  ABA10_RS04480 (ABA10_04480) yfiB 881479..883200 (+) 1722 WP_047182297.1 ABC transporter ATP-binding protein -
  ABA10_RS04485 (ABA10_04485) rcrQ 883194..885008 (+) 1815 WP_047182298.1 ABC transporter ATP-binding protein Regulator
  ABA10_RS04490 (ABA10_04490) catD 885162..885566 (+) 405 WP_015252533.1 DoxX family oxidoreductase CatD -
  ABA10_RS04495 (ABA10_04495) catE 885584..886441 (+) 858 WP_047182299.1 catechol 2,3-dioxygenase -
  ABA10_RS04500 (ABA10_04500) yfiF 886538..887482 (+) 945 WP_047182300.1 AraC family transcriptional regulator -
  ABA10_RS22185 - 887689..887820 (+) 132 Protein_835 hypothetical protein -
  ABA10_RS04505 (ABA10_04505) yfiH 887848..888789 (+) 942 WP_047182301.1 sugar phosphate isomerase/epimerase -
  ABA10_RS04510 (ABA10_04510) yfiI 888799..889980 (+) 1182 WP_080344172.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67395.25 Da        Isoelectric Point: 9.7755

>NTDB_id=128917 ABA10_RS04485 WP_047182298.1 883194..885008(+) (rcrQ) [Bacillus subtilis strain UD1022]
MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAERKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGLIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLLARFYEPNEGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKDGEMIEKGSHVELIRQKGFYSDLYESQFEK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=128917 ABA10_RS04485 WP_047182298.1 883194..885008(+) (rcrQ) [Bacillus subtilis strain UD1022]
ATGCTAAAAGACATCCGCAAGCCATTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAGGCGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAAAGAAAAGGACTGCTGATCCTTGTCATGC
TGATGGTTGTCATCAGCGCGATATTCGGGCTCCTTGGCCCCTTTGTGATTGGAAAGGCCATCGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTGATTCCCGTTTTGCTTCTTCTGCTCGCTATCTATATCATTCAGTCTCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATCGAAAATGTCAGTTCTACC
TTAAACACGTCAGTCATTCAAATTTTGTCAAGCGTGATCACCTTTGTCGGGACGATTGCGGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTTGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTCCTCGAAAAAAACGCTGCACTCAAAACTTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATTCCGAAGGTCATGAACTCTTTGAATAACTTAAGTTTTACAATGATTGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTCGTCTTTGCCGAGTATTCAAGACAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATCGCCGGCGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAAGAGCGCGAGGATGAAAAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCCGGGATGTGTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTTACCGTGCCTGCGGGGCAGTCCATTGCGTTTGTCGGACCG
ACGGGGGCGGGGAAGACAACCGTCACCAACCTTCTCGCCCGTTTTTACGAGCCTAACGAAGGAAAAATTTTAATCGACGG
TACAGATATTAAAACCCTTACTAGAGCGAGCCTGAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTACGGCAGGCTTGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGTTTTATTGAAAGGCTGCCAAAAGGGTATGACACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAAGGACA
GAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTTACAGAAGTCAACATTCAAGAAGCGCTCGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACCATTCAAAGAGCGGACCAGATTGTGGTGCTTAAAGACGGTGAAATGATTGAAAAAGGCAGCCATGTCGAGCT
GATTCGGCAAAAAGGATTTTACAGTGACTTATATGAAAGCCAATTTGAGAAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(382-531)

ABC transporter transmembrane region (ABC_membrane)

(49-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.31

96.026

0.377

Multiple sequence alignment