Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | IX91_RS00440 | Genome accession | NZ_CP009354 |
| Coordinates | 93073..93774 (+) | Length | 233 a.a. |
| NCBI ID | WP_004746089.1 | Uniprot ID | - |
| Organism | Vibrio tubiashii ATCC 19109 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 88073..98774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IX91_RS00425 (IX91_00440) | - | 89210..91534 (+) | 2325 | WP_004746092.1 | Tex family protein | - |
| IX91_RS00430 (IX91_00445) | - | 91627..92097 (-) | 471 | WP_004746091.1 | hypothetical protein | - |
| IX91_RS00435 (IX91_00450) | bioH | 92219..93013 (-) | 795 | WP_004746090.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| IX91_RS00440 (IX91_00455) | comF | 93073..93774 (+) | 702 | WP_004746089.1 | amidophosphoribosyltransferase | Machinery gene |
| IX91_RS00445 (IX91_00460) | nfuA | 93987..94574 (+) | 588 | WP_004746088.1 | Fe-S biogenesis protein NfuA | - |
| IX91_RS00450 (IX91_00465) | nudE | 94746..95291 (+) | 546 | WP_004746086.1 | ADP compounds hydrolase NudE | - |
| IX91_RS00455 (IX91_00470) | cysQ | 95352..96179 (+) | 828 | WP_004746085.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| IX91_RS00460 (IX91_00475) | recG | 96445..98523 (-) | 2079 | WP_004746081.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 233 a.a. Molecular weight: 26616.12 Da Isoelectric Point: 8.8001
>NTDB_id=128840 IX91_RS00440 WP_004746089.1 93073..93774(+) (comF) [Vibrio tubiashii ATCC 19109]
MLTQKVVKHIADLLPMHCEVCHLALTRPHSQSGICDHCSRYFAPLPRCQRCGLPTPFDIAECGECLKHPPKWRRLYCVAD
YQLPLAQYVHRLKYERQFWQASKLASLLAPRIETPAQVITFVPLHWGRYLRRGFNQSELIARSLARQLNVPCQPLFKRVR
ATPQQQGLTKVERKRNLDRAFLLNGEIVADHIAIVDDVLTTGSTVQHLCELLLEAGVKSVDIYCICRTPEPAS
MLTQKVVKHIADLLPMHCEVCHLALTRPHSQSGICDHCSRYFAPLPRCQRCGLPTPFDIAECGECLKHPPKWRRLYCVAD
YQLPLAQYVHRLKYERQFWQASKLASLLAPRIETPAQVITFVPLHWGRYLRRGFNQSELIARSLARQLNVPCQPLFKRVR
ATPQQQGLTKVERKRNLDRAFLLNGEIVADHIAIVDDVLTTGSTVQHLCELLLEAGVKSVDIYCICRTPEPAS
Nucleotide
Download Length: 702 bp
>NTDB_id=128840 IX91_RS00440 WP_004746089.1 93073..93774(+) (comF) [Vibrio tubiashii ATCC 19109]
ATGTTAACTCAAAAGGTAGTGAAACACATCGCCGACCTGTTGCCTATGCATTGCGAGGTTTGCCATCTCGCGTTGACCAG
GCCCCATTCACAAAGTGGCATATGTGACCATTGCTCGCGCTACTTCGCGCCTTTACCTCGTTGTCAGCGCTGTGGTTTGC
CTACTCCTTTTGATATTGCAGAGTGCGGAGAATGTCTTAAACATCCACCTAAATGGCGGCGGCTTTATTGCGTTGCTGAC
TATCAACTACCACTTGCGCAATATGTTCATAGGCTTAAGTACGAGCGGCAATTTTGGCAGGCGAGTAAGCTCGCGAGCCT
GCTCGCCCCAAGAATAGAAACGCCCGCACAGGTGATTACTTTTGTGCCCTTGCACTGGGGGCGGTATCTAAGGCGCGGAT
TTAATCAAAGTGAGTTGATAGCACGTTCACTGGCGCGGCAACTCAACGTACCGTGTCAGCCCCTGTTCAAAAGAGTGAGA
GCAACACCTCAGCAGCAAGGTTTAACTAAGGTGGAGCGAAAGCGAAATCTAGACCGTGCTTTCTTACTCAATGGAGAGAT
TGTTGCTGACCATATCGCGATTGTTGATGATGTTCTCACTACTGGTAGTACGGTGCAGCATTTATGTGAATTACTGCTTG
AAGCGGGGGTGAAAAGCGTTGATATTTACTGTATATGCCGTACTCCTGAGCCAGCAAGTTAG
ATGTTAACTCAAAAGGTAGTGAAACACATCGCCGACCTGTTGCCTATGCATTGCGAGGTTTGCCATCTCGCGTTGACCAG
GCCCCATTCACAAAGTGGCATATGTGACCATTGCTCGCGCTACTTCGCGCCTTTACCTCGTTGTCAGCGCTGTGGTTTGC
CTACTCCTTTTGATATTGCAGAGTGCGGAGAATGTCTTAAACATCCACCTAAATGGCGGCGGCTTTATTGCGTTGCTGAC
TATCAACTACCACTTGCGCAATATGTTCATAGGCTTAAGTACGAGCGGCAATTTTGGCAGGCGAGTAAGCTCGCGAGCCT
GCTCGCCCCAAGAATAGAAACGCCCGCACAGGTGATTACTTTTGTGCCCTTGCACTGGGGGCGGTATCTAAGGCGCGGAT
TTAATCAAAGTGAGTTGATAGCACGTTCACTGGCGCGGCAACTCAACGTACCGTGTCAGCCCCTGTTCAAAAGAGTGAGA
GCAACACCTCAGCAGCAAGGTTTAACTAAGGTGGAGCGAAAGCGAAATCTAGACCGTGCTTTCTTACTCAATGGAGAGAT
TGTTGCTGACCATATCGCGATTGTTGATGATGTTCTCACTACTGGTAGTACGGTGCAGCATTTATGTGAATTACTGCTTG
AAGCGGGGGTGAAAAGCGTTGATATTTACTGTATATGCCGTACTCCTGAGCCAGCAAGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
55.603 |
99.571 |
0.554 |
| comF | Vibrio campbellii strain DS40M4 |
48.347 |
100 |
0.502 |