Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AS86_RS31165 Genome accession   NZ_CP009351
Coordinates   4938739..4941075 (+) Length   778 a.a.
NCBI ID   WP_000528079.1    Uniprot ID   A0A9W5QQW8
Organism   Bacillus thuringiensis HD1002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4933739..4946075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS86_RS31145 (AS86_5094) cymR 4935145..4935561 (+) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -
  AS86_RS31150 (AS86_5095) - 4935597..4936742 (+) 1146 WP_000439891.1 cysteine desulfurase family protein -
  AS86_RS31155 (AS86_5096) mnmA 4936759..4937874 (+) 1116 WP_001038011.1 tRNA 2-thiouridine(34) synthase MnmA -
  AS86_RS31160 (AS86_5097) - 4937984..4938643 (+) 660 WP_000066406.1 tetratricopeptide repeat protein -
  AS86_RS31165 (AS86_5098) recD2 4938739..4941075 (+) 2337 WP_000528079.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AS86_RS31170 (AS86_5099) - 4941203..4941391 (+) 189 WP_000469281.1 hypothetical protein -
  AS86_RS31175 (AS86_5100) - 4941410..4941538 (+) 129 WP_001053553.1 YrzQ family protein -
  AS86_RS31180 (AS86_5101) - 4941585..4941797 (-) 213 WP_000242539.1 hypothetical protein -
  AS86_RS31185 (AS86_5102) - 4941974..4943041 (+) 1068 WP_000793121.1 AI-2E family transporter -
  AS86_RS31190 (AS86_5103) - 4943086..4943430 (-) 345 WP_000209588.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87466.00 Da        Isoelectric Point: 5.3320

>NTDB_id=128820 AS86_RS31165 WP_000528079.1 4938739..4941075(+) (recD2) [Bacillus thuringiensis HD1002]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFKSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=128820 AS86_RS31165 WP_000528079.1 4938739..4941075(+) (recD2) [Bacillus thuringiensis HD1002]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCACTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCGGAAAAAATTGTGGATCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTTAACAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCGGATGATA
TAGGGCGTGCGTTAGGAATATCGGGTAATCACGACGACCGTGTACGAGCGGGATGTTTTTACACATTAGAGAATGTCTCA
TTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCAACTTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTCGATTGATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAGTTAAACGTGCAGTATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAGCCAATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACAACTGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTTCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
GCTTGGCTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCGAATCAGCTATTTAAGTCGCTACCGACGAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGCGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCAGAAGGCTCATCTGTTATTCAACTTGCCCATGCAATCAAAGACGGCACGCTCCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGC
GAAAATGCTAAAACAAAAGGATTTAGTGCAAGGGATGTCCAAGTATTAGCGCCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCATTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTGT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAGCCAGAGAGCCAGGTGTTTAATGGTGATATTGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATCGTGAAAAGTTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCAAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTGGC
TAGTCGCTTGCAGGAATCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment