Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AS86_RS05810 Genome accession   NZ_CP009351
Coordinates   20921..21700 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis HD1002     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 15921..26700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS86_RS05790 (AS86_17) trmFO 16575..17879 (+) 1305 WP_000213007.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AS86_RS05795 (AS86_18) xerC 17945..18844 (+) 900 WP_001101244.1 tyrosine recombinase XerC -
  AS86_RS05800 (AS86_19) hslV 18887..19429 (+) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  AS86_RS05805 (AS86_20) hslU 19452..20843 (+) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  AS86_RS05810 (AS86_21) codY 20921..21700 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AS86_RS05815 (AS86_22) rpsB 22048..22749 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  AS86_RS05820 (AS86_23) tsf 22853..23740 (+) 888 WP_001018576.1 translation elongation factor Ts -
  AS86_RS05825 (AS86_24) pyrH 23807..24529 (+) 723 WP_000042669.1 UMP kinase -
  AS86_RS05830 (AS86_25) frr 24532..25089 (+) 558 WP_000531505.1 ribosome recycling factor -
  AS86_RS05835 (AS86_26) uppS 25175..25951 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=128779 AS86_RS05810 WP_000421290.1 20921..21700(+) (codY) [Bacillus thuringiensis HD1002]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=128779 AS86_RS05810 WP_000421290.1 20921..21700(+) (codY) [Bacillus thuringiensis HD1002]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment