Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABE83_RS30500 Genome accession   NZ_CP011522
Coordinates   7250907..7252277 (+) Length   456 a.a.
NCBI ID   WP_053561985.1    Uniprot ID   -
Organism   Streptomyces sp. CFMR 7 strain CFMR-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7245907..7257277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE83_RS30480 (ABE83_30540) - 7246927..7247718 (-) 792 WP_053561981.1 peptidylprolyl isomerase -
  ABE83_RS30485 (ABE83_30545) - 7247888..7248577 (+) 690 WP_053561982.1 MBL fold metallo-hydrolase -
  ABE83_RS30490 (ABE83_30550) hisS 7248595..7249857 (+) 1263 WP_053561983.1 histidine--tRNA ligase -
  ABE83_RS30495 (ABE83_30555) - 7250185..7250823 (+) 639 WP_053561984.1 vitamin K epoxide reductase family protein -
  ABE83_RS30500 (ABE83_30560) rarA 7250907..7252277 (+) 1371 WP_053561985.1 replication-associated recombination protein A Machinery gene
  ABE83_RS30505 (ABE83_30565) - 7252333..7253034 (-) 702 WP_019762728.1 DUF2470 domain-containing protein -
  ABE83_RS30510 (ABE83_30570) rpsD 7253226..7253840 (+) 615 WP_006123201.1 30S ribosomal protein S4 -
  ABE83_RS30515 (ABE83_30575) - 7253858..7256218 (-) 2361 WP_078949869.1 tetratricopeptide repeat protein -
  ABE83_RS30520 (ABE83_30580) - 7256416..7256877 (+) 462 WP_053561986.1 DUF948 domain-containing protein -
  ABE83_RS30525 (ABE83_30585) - 7256885..7257235 (+) 351 WP_019762729.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48578.01 Da        Isoelectric Point: 6.3805

>NTDB_id=128709 ABE83_RS30500 WP_053561985.1 7250907..7252277(+) (rarA) [Streptomyces sp. CFMR 7 strain CFMR-7]
MEPDLFTAAAEDRQEKDPSASPLAVRMRPRALDEVVGQQHLLKPGSPLRRLVEGSGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRASGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
VISPLLSRSLLLTLEPLTDDDLRDLVRRALTDERGLGGALTLPEDAEAHLLRIAGGDARRVLTALEAAAGAALATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAIFAAQEDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYIYP
HDVQGGIAAQQYAPDAVRDRRYYTPTRHGAEARYAEVVERVRERLGRQGGGPDPSS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=128709 ABE83_RS30500 WP_053561985.1 7250907..7252277(+) (rarA) [Streptomyces sp. CFMR 7 strain CFMR-7]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCGCCAGCCCCCTCGCTGTCCGGAT
GCGCCCCCGTGCCCTGGACGAGGTCGTCGGCCAGCAGCATCTGCTCAAGCCGGGCTCGCCGCTCCGCAGACTCGTCGAGG
GGAGCGGCGGTCCGGCCGGCGCCTCCTCGGTGATCCTGTGGGGCCCGCCCGGCACCGGGAAGACGACTCTCGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTGTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCCCGCCGCGCCTCCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTGACCCTGATCGCGGCCACCACGGAGAATCCGTACTTCTCG
GTGATCTCACCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGACCTGCGCGATCTGGTGCG
CCGGGCGCTGACCGACGAGCGCGGTCTCGGCGGGGCGCTCACGCTGCCCGAGGACGCGGAGGCGCATCTGCTGCGCATCG
CGGGCGGCGACGCGCGCCGGGTGCTCACGGCCCTGGAGGCGGCGGCCGGTGCGGCGCTCGCCACGCACGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCCACCGTCGACCGGGCCGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCCATCCGCGGCTCCGATGTCGACGCGGCCCTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGACCCCACCGCGCTGCCG
ACGGCGGTGGCGGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTCACCCTGAGCCACGCCACGATCGC
CCTCGCCCTCGCCCCGAAGTCCAACGCGGCGACGCTCGCGATCTTCGCCGCGCAGGAGGACGTCCGGAAGGGGCTCGCGG
GCCCCGTCCCGGCCCATCTGCGCGACGGCCATTACAAGGGCGCGGCCAAGCTCGGCCATGCCCAGGGCTATATCTATCCG
CATGACGTCCAGGGCGGTATCGCCGCCCAGCAGTACGCCCCGGACGCGGTCCGCGACCGGCGGTACTACACGCCCACCCG
GCACGGCGCCGAGGCGAGATACGCGGAGGTGGTCGAGCGGGTCCGCGAGCGCCTGGGCCGCCAGGGCGGCGGCCCGGACC
CGTCGTCCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

AAA C-terminal domain (AAA_assoc_2)

(199-275)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.981

94.737

0.417