Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BF38_RS28310 Genome accession   NZ_CP009335
Coordinates   4858113..4858892 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus thuringiensis strain HD1011     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4853113..4863892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF38_RS28285 (BF38_4992) uppS 4853859..4854635 (-) 777 WP_000971301.1 isoprenyl transferase -
  BF38_RS28290 (BF38_4993) frr 4854721..4855278 (-) 558 WP_000531503.1 ribosome recycling factor -
  BF38_RS28295 (BF38_4994) pyrH 4855281..4856003 (-) 723 WP_000042663.1 UMP kinase -
  BF38_RS28300 (BF38_4995) tsf 4856070..4856957 (-) 888 WP_001018581.1 translation elongation factor Ts -
  BF38_RS28305 (BF38_4996) rpsB 4857061..4857762 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  BF38_RS28310 (BF38_4997) codY 4858113..4858892 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BF38_RS28315 (BF38_4998) hslU 4858970..4860361 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  BF38_RS28320 (BF38_4999) hslV 4860384..4860926 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  BF38_RS28325 (BF38_5000) xerC 4860969..4861868 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  BF38_RS28330 (BF38_5001) trmFO 4861934..4863238 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=128703 BF38_RS28310 WP_000421288.1 4858113..4858892(-) (codY) [Bacillus thuringiensis strain HD1011]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=128703 BF38_RS28310 WP_000421288.1 4858113..4858892(-) (codY) [Bacillus thuringiensis strain HD1011]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATAGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment