Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ABE83_RS24510 Genome accession   NZ_CP011522
Coordinates   5862549..5864774 (+) Length   741 a.a.
NCBI ID   WP_053561215.1    Uniprot ID   -
Organism   Streptomyces sp. CFMR 7 strain CFMR-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5857549..5869774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE83_RS36565 - 5858311..5858460 (+) 150 WP_159041112.1 hypothetical protein -
  ABE83_RS36570 - 5858457..5858618 (+) 162 WP_159041113.1 hypothetical protein -
  ABE83_RS24485 (ABE83_24530) - 5859397..5860113 (-) 717 WP_053561210.1 VOC family protein -
  ABE83_RS24490 (ABE83_24535) - 5860227..5860448 (-) 222 WP_053561211.1 DUF397 domain-containing protein -
  ABE83_RS24495 (ABE83_24540) - 5860423..5861259 (-) 837 WP_053561212.1 helix-turn-helix transcriptional regulator -
  ABE83_RS24500 (ABE83_24545) - 5861517..5861858 (+) 342 WP_053561213.1 hypothetical protein -
  ABE83_RS24505 (ABE83_24550) - 5861831..5862337 (-) 507 WP_053561214.1 DUF6584 family protein -
  ABE83_RS24510 (ABE83_24555) recD/recD2/recDB 5862549..5864774 (+) 2226 WP_053561215.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABE83_RS24515 (ABE83_24560) - 5864989..5866278 (+) 1290 WP_018488933.1 citrate synthase -
  ABE83_RS24520 (ABE83_24565) - 5866988..5869372 (-) 2385 WP_053561216.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79840.35 Da        Isoelectric Point: 6.5915

>NTDB_id=128694 ABE83_RS24510 WP_053561215.1 5862549..5864774(+) (recD/recD2/recDB) [Streptomyces sp. CFMR 7 strain CFMR-7]
MSNMAVVEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQVGESLRMEGRWGSHSQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIENAPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCFLPEERL
IADGVKLLQVDTGLVIECLAELAADPEGVVREKVPSPEGGEPITAVYLIPFHRAELSLAGQVRRLLNTAEDRMPAFQDVD
WKKALAWLATRTGADLAPEQEEAVRLALSRKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLSDLLAE
GSPVPAVRLTRIFRQAQQSGVVTNAHRINAGQPPLTQGLNDFFLFVEDETADAGKLAVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGELNGLLQQSITPGRPDVPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDLDEQRLTVRT
DEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTNSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGSGEDFA

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=128694 ABE83_RS24510 WP_053561215.1 5862549..5864774(+) (recD/recD2/recDB) [Streptomyces sp. CFMR 7 strain CFMR-7]
ATGTCCAACATGGCCGTCGTCGAAGGGGTCCTGGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGGCGCGGTGCCGGGGATCTGCTCACGGTGGTCGGTTCGCTGCTCGGGGCGCAGGTCGGTGAGTCGCTGC
GGATGGAGGGCCGTTGGGGCTCGCACTCCCAGTACGGCAAGCAGTTCACCGTCGAGAACTACACCACCGTCCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTCGGCTCCGGGCTGATCAAGGGCATCGGGCCGGTCATGGCCGACCGGATCACCAC
CCATTTCGGCGTCGACACCCTCGACATCATCGAGAACGCACCGAAGCGGCTCGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACGAAGATGATCGCGGCGGCTTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATTGCCCAGGCGGTCGGCATTCCGCACGACAGCCCGG
AGCGGGTCAAGGCCGGTCTGCAGTACGCCCTCTCTCAGTCCTCCGACCAGGGGCACTGCTTCCTCCCCGAGGAGAGGCTC
ATCGCGGACGGGGTCAAGCTCCTCCAGGTCGACACCGGGCTGGTCATCGAGTGCCTGGCCGAGCTGGCCGCCGATCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGTCGCCGGAAGGGGGCGAGCCGATCACGGCCGTCTACCTCATCCCCTTCCATCGGG
CCGAGCTGTCCCTCGCCGGGCAGGTCAGGCGGTTGCTGAACACCGCCGAGGACCGGATGCCCGCCTTCCAGGACGTGGAC
TGGAAGAAGGCGCTGGCCTGGCTCGCCACGCGTACGGGAGCCGATCTCGCGCCCGAACAGGAGGAGGCCGTACGGCTCGC
GCTCAGCCGGAAGGTGGCCGTCCTGACCGGCGGGCCCGGCTGCGGGAAGTCCTTCACCGTCCGGTCCATCGTCGAGCTGG
CCCGGGCGAAGAAGGCCAAGGTGGTGCTTGCCGCTCCGACCGGGCGCGCAGCCAAACGCCTCTCCGAGCTGACCGGGGCC
GAGGCGTCCACCGTGCATCGGCTGCTGGAGCTGAAGCCGGGCGGGGACGCGGCGTACGACCGGGACCGGCCGCTCGACGC
CGATCTGGTCGTCGTCGACGAGGCATCCATGCTCGATCTGCTCCTCGCCAACAAGCTCGTGAAGGCCGTGGCACCCGGTG
CCCACCTCCTCCTCGTGGGCGATGTCGACCAGTTGCCCTCGGTCGGGGCGGGAGAGGTGCTGAGCGACCTCCTCGCGGAA
GGCAGCCCGGTGCCCGCCGTCCGGCTGACCCGGATCTTCCGGCAGGCCCAGCAGTCGGGCGTCGTGACCAACGCCCACCG
CATCAACGCCGGACAGCCGCCCCTCACCCAGGGGCTGAACGACTTCTTCCTCTTCGTGGAGGACGAGACGGCCGACGCGG
GCAAGCTGGCGGTGGACGTGGCGGCCCGCCGTATTCCGGCCAAGTTCGGCCTCGACCCACGCCGTGACGTGCAGGTCCTC
GCCCCGATGCACCGGGGGCCGGCGGGCGCGGGCGAGCTGAACGGGCTGCTCCAGCAGTCCATCACCCCCGGCCGCCCCGA
CGTCCCCGAGAAGCGGTTCGGCGGCCGTGTCTTCCGGGTCGGTGACAAGGTCACCCAGATCCGCAACAACTACGACAAGG
GCGAGAACGGCGTCTTCAACGGCACGGTCGGCGTCGTCACCGCCCTCGACCTGGACGAACAGCGGCTCACCGTCCGTACC
GACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCCTACGCCATGACGATCCACCGCTC
CCAGGGCAGCGAGTACCCGGCGGTCGTCATCCCCGTCACCAACAGTGCCTGGATGATGCTCCAGCGCAATCTGCTCTACA
CCGCCGTGACCAGGGCCAAGAAGCTCGTCGTACTGGTCGGGTCCCGTAAGGCGATCGGTCAGGCCGTCCGCACGGTTTCC
GCAGGCAGACGCTGTACGGCACTGGATTTCCGGCTCCGCGGCGGCTCGGGAGAAGACTTCGCGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-143)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(336-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.993

100

0.36

Multiple sequence alignment