Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BD64_RS09445 | Genome accession | NZ_CP009325 |
| Coordinates | 1565891..1566670 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain PAK-1 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1527068..1600992 | 1565891..1566670 | within | 0 |
Gene organization within MGE regions
Location: 1527068..1600992
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BD64_RS09255 (BD64_1663) | rsmB | 1527226..1528560 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BD64_RS09260 (BD64_1664) | rlmN | 1528565..1529653 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BD64_RS09265 (BD64_1665) | - | 1529658..1530410 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BD64_RS09270 (BD64_1666) | prkC | 1530419..1532392 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| BD64_RS09275 (BD64_1667) | rsgA | 1532661..1533542 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| BD64_RS09280 (BD64_1668) | rpe | 1533545..1534189 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| BD64_RS09285 (BD64_1669) | - | 1534289..1534969 (+) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| BD64_RS09290 | spoVM | 1535036..1535116 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BD64_RS09295 (BD64_1670) | rpmB | 1535189..1535377 (-) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| BD64_RS09300 (BD64_1671) | - | 1535756..1536118 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| BD64_RS09305 (BD64_1672) | - | 1536141..1537817 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| BD64_RS09310 (BD64_1673) | recG | 1538107..1540155 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| BD64_RS09315 (BD64_1674) | fapR | 1540244..1540837 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| BD64_RS09320 (BD64_1675) | plsX | 1540834..1541826 (+) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| BD64_RS09325 (BD64_1676) | fabD | 1541841..1542785 (+) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| BD64_RS09330 (BD64_1677) | fabG | 1542785..1543525 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BD64_RS09335 (BD64_1678) | acpP | 1543595..1543828 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| BD64_RS09340 (BD64_1679) | rncS | 1543887..1544624 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| BD64_RS09345 (BD64_1680) | smc | 1544771..1548340 (+) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| BD64_RS09350 (BD64_1681) | ftsY | 1548356..1549345 (+) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| BD64_RS09355 (BD64_1682) | - | 1549479..1549811 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BD64_RS09360 (BD64_1683) | ffh | 1549824..1551173 (+) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| BD64_RS09365 (BD64_1684) | rpsP | 1551274..1551546 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BD64_RS09370 (BD64_1685) | - | 1551561..1551788 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| BD64_RS09375 (BD64_1686) | rimM | 1551909..1552424 (+) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| BD64_RS09380 (BD64_1687) | trmD | 1552424..1553158 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BD64_RS09385 (BD64_1688) | rplS | 1553305..1553649 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BD64_RS09390 (BD64_1689) | lepB | 1553751..1554302 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| BD64_RS09395 (BD64_1690) | ylqF | 1554323..1555213 (+) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| BD64_RS09400 (BD64_1691) | rnhB | 1555265..1556038 (+) | 774 | WP_001174712.1 | ribonuclease HII | - |
| BD64_RS09405 (BD64_1692) | sucC | 1556232..1557392 (+) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BD64_RS09410 (BD64_1693) | sucD | 1557413..1558315 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| BD64_RS09415 (BD64_1694) | dprA | 1558637..1559271 (+) | 635 | Protein_1649 | DNA-processing protein DprA | - |
| BD64_RS09420 (BD64_1695) | topA | 1559416..1561494 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| BD64_RS09425 (BD64_1696) | trmFO | 1561545..1562849 (+) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BD64_RS09430 (BD64_1697) | xerC | 1562915..1563814 (+) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| BD64_RS09435 (BD64_1698) | hslV | 1563857..1564399 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BD64_RS09440 (BD64_1699) | hslU | 1564422..1565813 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| BD64_RS09445 (BD64_1700) | codY | 1565891..1566670 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BD64_RS09450 (BD64_1701) | rpsB | 1567020..1567721 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| BD64_RS09455 (BD64_1702) | tsf | 1567825..1568712 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| BD64_RS09460 (BD64_1703) | pyrH | 1568779..1569501 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| BD64_RS09465 (BD64_1704) | frr | 1569504..1570061 (+) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| BD64_RS09470 (BD64_1705) | uppS | 1570147..1570923 (+) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| BD64_RS09475 (BD64_1706) | cdsA | 1570941..1571732 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| BD64_RS09480 (BD64_1707) | dxr | 1571756..1572898 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BD64_RS09485 (BD64_1708) | rseP | 1572915..1574171 (+) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| BD64_RS09490 (BD64_1709) | - | 1574281..1575981 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| BD64_RS09495 (BD64_1710) | - | 1576106..1580407 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| BD64_RS09500 (BD64_1711) | rimP | 1580740..1581210 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| BD64_RS09505 (BD64_1712) | nusA | 1581228..1582334 (+) | 1107 | WP_000102610.1 | transcription termination factor NusA | - |
| BD64_RS09510 (BD64_1713) | rnpM | 1582346..1582618 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| BD64_RS09515 (BD64_1714) | - | 1582619..1582930 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| BD64_RS09520 (BD64_1715) | infB | 1582935..1584995 (+) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| BD64_RS09525 (BD64_1716) | - | 1584992..1585273 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| BD64_RS09530 (BD64_1717) | rbfA | 1585289..1585645 (+) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| BD64_RS09535 (BD64_1718) | truB | 1585732..1586655 (+) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| BD64_RS09540 (BD64_1719) | ribF | 1586699..1587670 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BD64_RS09545 (BD64_1720) | rpsO | 1587771..1588040 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| BD64_RS09550 (BD64_1721) | pnp | 1588201..1590339 (+) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| BD64_RS09555 (BD64_1722) | - | 1590491..1591390 (+) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| BD64_RS09560 (BD64_1723) | - | 1591477..1592718 (+) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| BD64_RS09565 (BD64_1724) | - | 1592845..1593096 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| BD64_RS09570 (BD64_1725) | dpaA | 1593371..1594273 (+) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| BD64_RS09575 (BD64_1726) | dpaB | 1594270..1594869 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| BD64_RS09580 (BD64_1727) | asd | 1595020..1596066 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| BD64_RS09585 (BD64_1728) | dapG | 1596090..1597322 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| BD64_RS09590 (BD64_1729) | dapA | 1597334..1598212 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BD64_RS09600 (BD64_1730) | - | 1598978..1600648 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=128540 BD64_RS09445 WP_000421288.1 1565891..1566670(+) (codY) [Bacillus anthracis strain PAK-1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=128540 BD64_RS09445 WP_000421288.1 1565891..1566670(+) (codY) [Bacillus anthracis strain PAK-1]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |