Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AA958_RS13615 Genome accession   NZ_CP011492
Coordinates   3262357..3264195 (-) Length   612 a.a.
NCBI ID   WP_047020029.1    Uniprot ID   -
Organism   Streptomyces sp. CNQ-509     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3257357..3269195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA958_RS13585 (AA958_13585) - 3257572..3257766 (-) 195 WP_047016423.1 DUF397 domain-containing protein -
  AA958_RS13590 (AA958_13590) - 3257778..3258677 (-) 900 WP_253911262.1 helix-turn-helix transcriptional regulator -
  AA958_RS13595 (AA958_13595) - 3258846..3259295 (+) 450 WP_078898277.1 ATP-binding protein -
  AA958_RS13600 (AA958_13600) - 3259309..3260325 (-) 1017 WP_047016425.1 LacI family DNA-binding transcriptional regulator -
  AA958_RS13605 (AA958_13605) - 3260401..3261150 (-) 750 WP_047016426.1 response regulator transcription factor -
  AA958_RS13610 (AA958_13610) - 3261311..3262360 (+) 1050 WP_047016427.1 alpha/beta fold hydrolase -
  AA958_RS13615 (AA958_13615) rcrQ 3262357..3264195 (-) 1839 WP_047020029.1 ABC transporter ATP-binding protein Regulator
  AA958_RS13620 (AA958_13620) rcrP 3264296..3266041 (-) 1746 WP_047016428.1 ABC transporter ATP-binding protein Regulator
  AA958_RS13625 (AA958_13625) - 3266139..3266396 (+) 258 WP_047016429.1 MoaD/ThiS family protein -
  AA958_RS13630 (AA958_13630) - 3266404..3268260 (+) 1857 WP_047016430.1 hypothetical protein -
  AA958_RS13635 (AA958_13635) - 3268413..3269141 (+) 729 WP_047016431.1 DUF2993 domain-containing protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 65952.53 Da        Isoelectric Point: 5.0334

>NTDB_id=128520 AA958_RS13615 WP_047020029.1 3262357..3264195(-) (rcrQ) [Streptomyces sp. CNQ-509]
MRMFSGPPVERSLDFRGSAVRLLRTLRPDRTLIRVILVLGAAGVALTVAGPKLLGHATDLVVAGVYGDRVDTGSARASDG
IDFDAVGRTLLWAALVYAAAWGLGLAQARLTAVVVQRAVFRLREEVEAKLSRLPLSYFDRHQRGEILSRTTNDIDNVGQS
LQQTMSQIVTSLLTIAGVLAVMFWISPLLALVALVTVPLSITVATRVGKRAQPQFVAQWASTGKLNAHIEEMYTGHSLVQ
VFGRREEAAETFRKENDELFRAGYRAQFISGLIQPAMMCIGNLNYVLVAVVGGLRVASGALSIGDVQAFVQYSRQFSQPL
GQIASMANLVQSGVASAERVFELLDADEQEPDAATPARPAEPVRGEVAFESVSFSYDPEKPLIEDLSLTVRPGQTVAIVG
PTGAGKTTLVNLLMRFYEVAGGRILLDGVDVAEMSREELRAQIGMVLQDTWLFGGTIAENIAYGAPAGTPHEKIVAAAKA
THVDRFVRTLPDGYDTVIDEEGTGVSAGEKQLVTIARAFLAEPAILVLDEATSSVDTRTEVLIQHAMAELRTGRTSFVIA
HRLSTIRDADVILVMESGTIVEQGTHEELLASEGAYARLYQAQFAEPAAETI

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=128520 AA958_RS13615 WP_047020029.1 3262357..3264195(-) (rcrQ) [Streptomyces sp. CNQ-509]
ATGCGCATGTTCAGCGGCCCGCCCGTCGAGCGCTCCCTCGACTTCCGCGGCTCGGCCGTCCGCCTCCTGCGCACCCTGCG
CCCCGACCGCACGCTGATCCGCGTCATCCTCGTCCTCGGCGCCGCCGGCGTCGCGCTCACGGTCGCGGGCCCGAAGCTCC
TCGGCCACGCCACCGACCTCGTCGTCGCCGGCGTCTACGGCGACCGCGTCGACACCGGCTCCGCCCGCGCCAGCGACGGC
ATCGACTTCGACGCGGTCGGCCGGACGCTGCTGTGGGCGGCCCTGGTGTACGCCGCCGCGTGGGGCCTCGGGCTCGCCCA
GGCGCGGCTGACGGCCGTGGTCGTGCAGCGGGCGGTCTTCCGGCTGCGCGAGGAGGTGGAGGCGAAGCTGTCGCGGCTGC
CGCTGTCGTACTTCGACCGCCACCAGCGGGGCGAGATCCTCTCCCGTACGACCAACGACATCGACAACGTCGGGCAGTCG
CTGCAGCAGACCATGAGCCAGATCGTGACGTCGCTGCTGACGATCGCGGGGGTGCTGGCGGTGATGTTCTGGATCTCGCC
GCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGATCACGGTGGCGACGCGGGTCGGCAAGCGGGCGCAGCCGC
AGTTCGTGGCGCAGTGGGCGTCCACGGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCACTCGCTGGTGCAG
GTCTTCGGCCGCCGGGAGGAGGCGGCGGAGACGTTCCGGAAGGAGAACGACGAGCTGTTCCGGGCGGGCTACCGGGCGCA
GTTCATCTCCGGGCTCATCCAGCCGGCGATGATGTGCATAGGCAACCTCAACTACGTGCTCGTCGCCGTCGTCGGCGGCC
TGCGGGTCGCCTCGGGGGCGCTGTCGATCGGCGACGTGCAGGCGTTCGTGCAGTACTCGCGGCAGTTCAGCCAGCCGCTG
GGGCAGATCGCGTCGATGGCGAACCTGGTGCAGTCAGGTGTCGCGTCGGCGGAGCGGGTCTTCGAGCTGCTGGACGCGGA
CGAGCAGGAGCCGGACGCCGCCACCCCGGCCCGCCCGGCGGAGCCGGTGCGGGGGGAGGTGGCGTTCGAGTCCGTCTCCT
TCTCGTACGACCCGGAGAAACCGCTGATCGAGGACCTGTCGCTGACGGTCCGCCCGGGCCAGACGGTGGCGATCGTCGGC
CCGACGGGGGCGGGGAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGGCCGGGGGCCGGATCCTGCTCGA
CGGCGTGGACGTGGCGGAGATGAGCCGCGAGGAGCTGCGGGCGCAGATCGGGATGGTGCTCCAGGACACGTGGCTGTTCG
GCGGCACGATCGCGGAGAACATCGCCTACGGGGCGCCGGCGGGCACACCGCACGAGAAGATCGTCGCCGCCGCGAAGGCC
ACCCACGTGGACCGCTTCGTCCGCACCCTCCCCGACGGCTACGACACGGTGATCGACGAGGAGGGCACGGGCGTCTCGGC
GGGCGAGAAGCAGCTCGTCACCATCGCCCGCGCGTTCCTCGCGGAACCGGCGATCCTGGTCCTGGACGAGGCGACGAGCT
CGGTGGACACCCGCACGGAGGTCCTGATCCAGCACGCGATGGCGGAACTCCGCACGGGCCGCACGAGCTTCGTGATCGCC
CACCGCCTCTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGTCGGGCACGATCGTGGAACAGGGCACACACGA
GGAACTCCTGGCATCGGAAGGCGCCTACGCCCGCCTGTACCAGGCCCAGTTCGCGGAGCCGGCAGCAGAAACGATCTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(36-320)

ABC transporter (ABC_tran)

(384-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.979

95.425

0.41

Multiple sequence alignment