Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AS54_RS23190 Genome accession   NZ_CP009318
Coordinates   4271941..4274277 (-) Length   778 a.a.
NCBI ID   WP_000528065.1    Uniprot ID   A0A158RUG3
Organism   Bacillus cereus 03BB102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4266941..4279277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS54_RS23165 (AS54_4442) - 4269603..4269947 (+) 345 WP_000209458.1 PH domain-containing protein -
  AS54_RS23170 (AS54_4443) - 4269986..4271053 (-) 1068 WP_000793108.1 AI-2E family transporter -
  AS54_RS23175 (AS54_4444) - 4271230..4271442 (+) 213 WP_000242546.1 hypothetical protein -
  AS54_RS23180 (AS54_4445) - 4271478..4271606 (-) 129 WP_001053553.1 YrzQ family protein -
  AS54_RS23185 (AS54_4446) - 4271625..4271813 (-) 189 WP_000469281.1 hypothetical protein -
  AS54_RS23190 (AS54_4447) recD2 4271941..4274277 (-) 2337 WP_000528065.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AS54_RS23195 (AS54_4448) - 4274373..4275032 (-) 660 WP_000066395.1 tetratricopeptide repeat protein -
  AS54_RS23200 (AS54_4449) mnmA 4275143..4276258 (-) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  AS54_RS23205 (AS54_4450) - 4276275..4277420 (-) 1146 WP_000439913.1 cysteine desulfurase family protein -
  AS54_RS23210 (AS54_4451) cymR 4277456..4277872 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87376.87 Da        Isoelectric Point: 5.2015

>NTDB_id=128497 AS54_RS23190 WP_000528065.1 4271941..4274277(-) (recD2) [Bacillus cereus 03BB102]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLIRETMSLLNNQEGRVAEEDVVGCIEMMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMSQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=128497 AS54_RS23190 WP_000528065.1 4271941..4274277(-) (recD2) [Bacillus cereus 03BB102]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGACATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAACGCACAGCTGAAAAAATTGTGGACCATCTAGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAACGGTGTTGTTAACAAACAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAGTATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTAGACGGGATTGGTTTTGGTAGGGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTATACGTTAGAGAATGTTTCA
CTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTATAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGGCTGAGGAAGACGTTGTAGGCTGTATTGAAATGATGCAAAGTGAAGGAAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCGACGCTGTTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAGTCAAGAAGAAACACCTTCA
TTTCCAGAAGCAGAAGTGTTAAAAACATTAGGCGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGATTATCGTTAAATCCAAATGAATACAGTGATGATAATCCATTTCCTATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGTCTTCCGGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTATTGAAAGATTTATTAAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTTTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCGGAGAGCCAAGTATTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCTTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCCATTGTGA
TTATGCCGATAGTGAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGCCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A158RUG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.581

Multiple sequence alignment