Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AA958_RS03235 Genome accession   NZ_CP011492
Coordinates   830781..832169 (-) Length   462 a.a.
NCBI ID   WP_047014714.1    Uniprot ID   -
Organism   Streptomyces sp. CNQ-509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 825781..837169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA958_RS03210 (AA958_03210) ruvX 825838..826305 (-) 468 WP_173534916.1 Holliday junction resolvase RuvX -
  AA958_RS03215 (AA958_03215) alaS 826331..829000 (-) 2670 WP_047014710.1 alanine--tRNA ligase -
  AA958_RS03220 (AA958_03220) - 829000..829350 (-) 351 WP_047014711.1 DUF6167 family protein -
  AA958_RS03225 (AA958_03225) - 829356..829811 (-) 456 WP_078898137.1 DUF948 domain-containing protein -
  AA958_RS03230 (AA958_03230) rpsD 830008..830619 (-) 612 WP_047014713.1 30S ribosomal protein S4 -
  AA958_RS03235 (AA958_03235) rarA 830781..832169 (-) 1389 WP_047014714.1 replication-associated recombination protein A Machinery gene
  AA958_RS03240 (AA958_03240) - 832203..832844 (-) 642 WP_047014715.1 vitamin K epoxide reductase family protein -
  AA958_RS03245 (AA958_03245) hisS 833027..834313 (-) 1287 WP_047014716.1 histidine--tRNA ligase -
  AA958_RS03250 (AA958_03250) - 834310..835029 (-) 720 WP_047014717.1 MBL fold metallo-hydrolase -
  AA958_RS03255 (AA958_03255) - 835223..836077 (+) 855 WP_047014718.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48583.91 Da        Isoelectric Point: 5.8554

>NTDB_id=128494 AA958_RS03235 WP_047014714.1 830781..832169(-) (rarA) [Streptomyces sp. CNQ-509]
MEPDLFTAAAEERQEKDPGSSPLAVRMRPRSLDEVVGQQHLLKPGAPLRRLVGEGAGGPAGPASVLLWGPPGTGKTTLAY
VVSQATQKRFVELSAITAGVKEVRAVIEGARRAAGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDVRGLLRRAVAAERGLGGAVTLPEESEEHLLRIAGGDARRALTALEAAAGAALAQGEAE
VSLPTLEAAVDRAAVAYDRDGDQHYDVASALIKSVRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADSSAL
QTAVAAAQAVAMIGFPEAALTLAHATVALALAPKSNAVTKAIGAAMDDVRAGKAGPVPAHLRDGHYKGAEKLGHAQGYVY
PHDIPGAIAAQQYAPDALAGRRYYEPTRYGAEARYAEVVERVRERLAGGGQDAPGRGGDGRD

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=128494 AA958_RS03235 WP_047014714.1 830781..832169(-) (rarA) [Streptomyces sp. CNQ-509]
GTGGAGCCCGACCTGTTCACCGCAGCGGCCGAGGAGCGCCAGGAGAAGGATCCCGGCAGCTCCCCGCTGGCTGTCCGGAT
GCGCCCGCGCAGCCTCGACGAGGTGGTGGGCCAGCAGCATCTGCTCAAGCCCGGCGCGCCGCTGCGCCGGCTCGTCGGCG
AGGGCGCCGGGGGCCCGGCGGGCCCGGCGTCCGTGCTGCTGTGGGGTCCGCCGGGCACCGGCAAGACGACCCTGGCCTAC
GTGGTCAGCCAGGCCACCCAGAAGCGCTTCGTGGAGCTGTCCGCGATCACCGCGGGGGTCAAGGAGGTCCGCGCGGTCAT
CGAGGGCGCCCGCCGCGCCGCCGGGGGGTACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCGCTGCTGCCCGCGGTGGAGAACCGCTGGGTGACGCTGATCGCGGCCACCACGGAGAATCCGTACTTC
TCGGTGATCTCCCCGCTCCTCTCCCGCTCGCTGCTGCTCACGCTGGAGCCCCTCACCGACGACGACGTGCGCGGGCTGCT
GCGCCGGGCGGTCGCCGCCGAGCGCGGGCTGGGCGGCGCGGTGACGCTGCCCGAGGAGTCCGAGGAGCACCTGCTGCGCA
TCGCCGGCGGCGACGCGCGCCGGGCGCTCACGGCGCTGGAGGCGGCGGCCGGCGCGGCGCTGGCGCAGGGCGAGGCGGAG
GTGTCGCTGCCGACGCTGGAGGCGGCGGTGGACCGCGCCGCCGTGGCGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCGAGCGCCCTGATCAAGTCCGTGCGCGGCTCGGACGTGGACGCGGCGCTGCACTATCTGGCGCGCATGATCGAGGCGG
GCGAGGACCCGCGGTTCATCGCCCGCCGGCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACTCCTCGGCGCTG
CAGACGGCGGTCGCGGCGGCCCAGGCGGTGGCGATGATCGGCTTCCCGGAGGCGGCGCTGACGCTGGCGCACGCCACGGT
GGCGCTCGCGCTGGCCCCGAAGTCCAACGCGGTGACGAAGGCCATCGGCGCCGCCATGGACGACGTACGGGCTGGGAAGG
CGGGCCCCGTGCCGGCGCATCTGCGGGACGGGCACTACAAGGGCGCGGAGAAGCTGGGGCACGCGCAGGGGTACGTGTAT
CCGCACGACATACCGGGCGCCATCGCCGCCCAGCAGTACGCCCCCGACGCCCTCGCCGGCCGCAGGTACTACGAGCCGAC
GCGGTACGGCGCCGAGGCCCGGTACGCCGAGGTGGTCGAGCGGGTGCGGGAGCGGCTGGCGGGCGGGGGCCAGGACGCCC
CCGGCCGGGGCGGCGACGGACGCGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

42.558

93.074

0.396

Multiple sequence alignment