Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AA974_RS01875 Genome accession   NZ_CP011487
Coordinates   380033..381208 (-) Length   391 a.a.
NCBI ID   WP_064433183.1    Uniprot ID   -
Organism   Helicobacter pylori strain PNG84A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 375033..386208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA974_RS01840 (AA974_01860) - 375353..375667 (+) 315 WP_064433178.1 hypothetical protein -
  AA974_RS01845 (AA974_01865) - 375645..376412 (+) 768 WP_064433179.1 RNA polymerase sigma factor FliA -
  AA974_RS01850 (AA974_01870) fliM 376405..377469 (+) 1065 WP_000763582.1 flagellar motor switch protein FliM -
  AA974_RS01855 (AA974_01875) fliY 377473..378336 (+) 864 WP_064433180.1 flagellar motor switch protein FliY -
  AA974_RS01860 (AA974_01880) - 378364..378900 (+) 537 WP_064433181.1 YhcH/YjgK/YiaL family protein -
  AA974_RS01865 (AA974_01885) - 378897..379400 (+) 504 WP_064433182.1 DUF2147 domain-containing protein -
  AA974_RS01870 (AA974_01890) fur 379420..379872 (-) 453 WP_021177510.1 ferric iron uptake transcriptional regulator -
  AA974_RS01875 (AA974_01895) rarA 380033..381208 (-) 1176 WP_064433183.1 replication-associated recombination protein A Machinery gene
  AA974_RS01880 (AA974_01900) - 381205..381576 (-) 372 WP_000332997.1 heat shock protein transcriptional repressor HspR -
  AA974_RS01885 (AA974_01905) - 381586..382452 (-) 867 WP_064433184.1 DnaJ C-terminal domain-containing protein -
  AA974_RS01890 (AA974_01910) - 382620..383870 (+) 1251 WP_064433185.1 hypothetical protein -
  AA974_RS01895 (AA974_01915) - 383965..384831 (-) 867 WP_080470993.1 5'-3' exonuclease -
  AA974_RS08215 (AA974_01920) - 384815..385003 (-) 189 WP_064433187.1 hypothetical protein -
  AA974_RS01905 (AA974_01925) - 385056..385952 (-) 897 WP_064433188.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43775.50 Da        Isoelectric Point: 8.4202

>NTDB_id=128464 AA974_RS01875 WP_064433183.1 380033..381208(-) (rarA) [Helicobacter pylori strain PNG84A]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFMDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSQAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPNAKTYLLNNSAGDARALLNLLDLSAKIEYPITLKTLQSLRPHSLNDGSYSGDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLSSVKQIGYPEARIILSQCVIYLACSPKSNTVY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=128464 AA974_RS01875 WP_064433183.1 380033..381208(-) (rarA) [Helicobacter pylori strain PNG84A]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTAGAGCGCCCCATTCTTTCATTTAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACTCTTTTAAAGCCCGTTGTTTTTATGGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTCTGATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCAAGCGATTCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTGACATTGCTCAAAAAACAAATAGAGCCTAATGCTAAAACCTATCTCTTAAACAACAGTGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAATATCCTATCACTTTAAAAACGCTGCAATCTTTACGGCCTCATA
GCTTGAATGACGGATCTTATAGCGGTGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTAGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTTAATTTAGCCGCTTCTTGCTTATCTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCCTGTTCGCCCAAGTCTAACACGGTCTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTTGCTCTACCCTATTCCTAAACACCTACTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389