Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   AA977_RS05260 Genome accession   NZ_CP011486
Coordinates   1115370..1116143 (+) Length   257 a.a.
NCBI ID   WP_064434844.1    Uniprot ID   -
Organism   Helicobacter pylori strain K26A1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1110370..1121143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA977_RS05255 (AA977_05330) hopL 1111683..1115348 (+) 3666 WP_064434843.1 Hop family outer membrane protein HopL -
  AA977_RS05260 (AA977_05335) proC 1115370..1116143 (+) 774 WP_064434844.1 pyrroline-5-carboxylate reductase Machinery gene
  AA977_RS05265 (AA977_05340) fic 1116173..1116706 (+) 534 WP_064434845.1 protein adenylyltransferase Fic -
  AA977_RS05270 (AA977_05345) ybeY 1117059..1117481 (-) 423 WP_064434846.1 rRNA maturation RNase YbeY -
  AA977_RS05275 (AA977_05350) - 1117533..1118027 (-) 495 WP_000516030.1 flavodoxin -
  AA977_RS05280 (AA977_05355) - 1118118..1118699 (-) 582 WP_064434847.1 DedA family protein -
  AA977_RS05285 (AA977_05360) ccoS 1118820..1119011 (+) 192 WP_064434848.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  AA977_RS05290 (AA977_05365) - 1119029..1120000 (+) 972 WP_064434849.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28233.69 Da        Isoelectric Point: 8.0398

>NTDB_id=128441 AA977_RS05260 WP_064434844.1 1115370..1116143(+) (proC) [Helicobacter pylori strain K26A1]
METLQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVHYKNAINVHEKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALKDAIDSSHYLKCMPNIASKFALSSTAVCEKSVAPLISQKALSIIESFGSCVRVGSEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEQERPEMITEQICTPKGVTIEGLSVLEKRGV
RGAFIEACHESVKKMRP

Nucleotide


Download         Length: 774 bp        

>NTDB_id=128441 AA977_RS05260 WP_064434844.1 1115370..1116143(+) (proC) [Helicobacter pylori strain K26A1]
ATGGAAACTTTGCAATTCATTGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCGCATGAAATTTTGTCCAAGCG
TTTTATTTTAGAAATCACCGGGAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCTCAAATTG
TGCATTACAAAAACGCTATTAATGTGCATGAAAAATTCGTATTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAC
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCATTAGCCGGGGTGAATTTTGAAGCCTTAAAGGACGCGATTGATTCTTC
ACATTACCTCAAATGCATGCCCAATATTGCAAGCAAATTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCAGTTGCAC
CTTTGATAAGCCAAAAGGCTTTGAGTATCATTGAAAGCTTTGGGAGTTGCGTGCGAGTGGGCAGTGAAGAGCAGGTGGAT
TCTAGCGTCGCCACCAATGGGAGCGCGCTCGCTTTTTTAAGCTTAGTAGCGAGCAGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTAGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTTTTAGAACAAGAACGCC
CTGAGATGATTACAGAGCAAATTTGCACCCCTAAAGGCGTAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAGGGGGGTT
AGGGGAGCGTTTATAGAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCCCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.154

98.444

0.366

Multiple sequence alignment