Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | AA977_RS02050 | Genome accession | NZ_CP011486 |
| Coordinates | 426585..427760 (-) | Length | 391 a.a. |
| NCBI ID | WP_064434387.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain K26A1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 421585..432760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA977_RS02015 (AA977_02045) | - | 421907..422221 (+) | 315 | WP_001265943.1 | hypothetical protein | - |
| AA977_RS02020 (AA977_02050) | - | 422199..422975 (+) | 777 | WP_064434383.1 | RNA polymerase sigma factor FliA | - |
| AA977_RS02025 (AA977_02055) | fliM | 422968..424032 (+) | 1065 | WP_000763576.1 | flagellar motor switch protein FliM | - |
| AA977_RS02030 (AA977_02060) | fliY | 424036..424884 (+) | 849 | WP_064434384.1 | flagellar motor switch protein FliY | - |
| AA977_RS02035 (AA977_02065) | - | 424913..425449 (+) | 537 | WP_064434385.1 | YhcH/YjgK/YiaL family protein | - |
| AA977_RS02040 (AA977_02070) | - | 425446..425949 (+) | 504 | WP_033602164.1 | DUF2147 domain-containing protein | - |
| AA977_RS02045 (AA977_02075) | fur | 425971..426423 (-) | 453 | WP_064434386.1 | ferric iron uptake transcriptional regulator | - |
| AA977_RS02050 (AA977_02080) | rarA | 426585..427760 (-) | 1176 | WP_064434387.1 | replication-associated recombination protein A | Machinery gene |
| AA977_RS02055 (AA977_02085) | - | 427757..428128 (-) | 372 | WP_064434388.1 | helix-turn-helix transcriptional regulator | - |
| AA977_RS02060 (AA977_02090) | - | 428138..429004 (-) | 867 | WP_064434389.1 | DnaJ C-terminal domain-containing protein | - |
| AA977_RS02065 (AA977_02095) | - | 429172..430422 (+) | 1251 | WP_064434390.1 | hypothetical protein | - |
| AA977_RS02070 (AA977_02100) | - | 430624..431496 (-) | 873 | WP_064434391.1 | 5'-3' exonuclease | - |
| AA977_RS02075 (AA977_02105) | - | 431731..432627 (-) | 897 | WP_064434392.1 | OriC activity response regulator | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43792.44 Da Isoelectric Point: 8.5308
>NTDB_id=128429 AA977_RS02050 WP_064434387.1 426585..427760(-) (rarA) [Helicobacter pylori strain K26A1]
MSLSALLNPKRLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHSLERPILSFNATDFKLDDLRL
KLKNYQHALLKPVIFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCSK
ALILLNKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRSHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALECVQKGLLYPIPKHLLPDSKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
MSLSALLNPKRLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHSLERPILSFNATDFKLDDLRL
KLKNYQHALLKPVIFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCSK
ALILLNKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRSHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALECVQKGLLYPIPKHLLPDSKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=128429 AA977_RS02050 WP_064434387.1 426585..427760(-) (rarA) [Helicobacter pylori strain K26A1]
ATGAGTTTGAGTGCACTTTTAAACCCCAAAAGATTAGAAGATTTTTTAGGTCAAGAGCATTTAGTAGGAAAAGACGCTCC
CCTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCAGGCGTGGGTAAAACAAGCTTAG
CCCAAATCATCGCCCATTCGCTAGAGCGCCCCATTCTTTCGTTTAATGCAACGGATTTCAAGCTTGATGATTTGCGCCTT
AAGCTTAAAAATTACCAACACGCCCTTTTAAAACCCGTTATTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTGCTCCCCATTATGGAAAAAGATCACGCTCTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAAAAAAAGCGATTTAGACAAACTTTGTTCTAAA
GCTTTAATATTGTTAAACAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCCGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTACAATCCTTACGGTCCCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCTTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCCAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATTTGGCTTGTTCGCCCAAATCTAACACGGCTTAT
AAAGCGATCAATCAGGCTTTAGAATGCGTTCAAAAAGGCTTGCTCTATCCCATTCCTAAACACTTATTGCCTGATTCTAA
AGATTACCTTTACCCACACGATTATAACGGCTATGTCAAACAAGACTATTTGGAAAAACCTTTGAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTAA
ATGAGTTTGAGTGCACTTTTAAACCCCAAAAGATTAGAAGATTTTTTAGGTCAAGAGCATTTAGTAGGAAAAGACGCTCC
CCTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCAGGCGTGGGTAAAACAAGCTTAG
CCCAAATCATCGCCCATTCGCTAGAGCGCCCCATTCTTTCGTTTAATGCAACGGATTTCAAGCTTGATGATTTGCGCCTT
AAGCTTAAAAATTACCAACACGCCCTTTTAAAACCCGTTATTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTGCTCCCCATTATGGAAAAAGATCACGCTCTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAAAAAAAGCGATTTAGACAAACTTTGTTCTAAA
GCTTTAATATTGTTAAACAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCCGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTACAATCCTTACGGTCCCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCTTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCCAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATTTGGCTTGTTCGCCCAAATCTAACACGGCTTAT
AAAGCGATCAATCAGGCTTTAGAATGCGTTCAAAAAGGCTTGCTCTATCCCATTCCTAAACACTTATTGCCTGATTCTAA
AGATTACCTTTACCCACACGATTATAACGGCTATGTCAAACAAGACTATTTGGAAAAACCTTTGAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
37.019 |
100 |
0.394 |