Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | AA973_RS02040 | Genome accession | NZ_CP011485 |
| Coordinates | 408961..410136 (-) | Length | 391 a.a. |
| NCBI ID | WP_064437417.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ausabrJ05 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 403961..415136
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA973_RS02005 (AA973_02010) | - | 404280..404594 (+) | 315 | WP_064437412.1 | hypothetical protein | - |
| AA973_RS02010 (AA973_02015) | - | 404572..405339 (+) | 768 | WP_064437413.1 | RNA polymerase sigma factor FliA | - |
| AA973_RS02015 (AA973_02020) | fliM | 405332..406396 (+) | 1065 | WP_000763576.1 | flagellar motor switch protein FliM | - |
| AA973_RS02020 (AA973_02025) | fliY | 406400..407263 (+) | 864 | WP_064437414.1 | flagellar motor switch protein FliY | - |
| AA973_RS02025 (AA973_02030) | - | 407292..407828 (+) | 537 | WP_064437415.1 | YhcH/YjgK/YiaL family protein | - |
| AA973_RS02030 (AA973_02035) | - | 407825..408328 (+) | 504 | WP_064437416.1 | DUF2147 domain-containing protein | - |
| AA973_RS02035 (AA973_02040) | fur | 408349..408801 (-) | 453 | WP_021177510.1 | ferric iron uptake transcriptional regulator | - |
| AA973_RS02040 (AA973_02045) | rarA | 408961..410136 (-) | 1176 | WP_064437417.1 | replication-associated recombination protein A | Machinery gene |
| AA973_RS02045 (AA973_02050) | - | 410133..410504 (-) | 372 | WP_000332997.1 | heat shock protein transcriptional repressor HspR | - |
| AA973_RS02050 (AA973_02055) | - | 410514..411380 (-) | 867 | WP_064437418.1 | DnaJ C-terminal domain-containing protein | - |
| AA973_RS02055 (AA973_02060) | - | 411548..412798 (+) | 1251 | WP_064437419.1 | hypothetical protein | - |
| AA973_RS02060 (AA973_02065) | - | 412907..413773 (-) | 867 | WP_080471613.1 | 5'-3' exonuclease | - |
| AA973_RS02065 (AA973_02070) | - | 413998..414894 (-) | 897 | WP_064437421.1 | OriC activity response regulator | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43750.52 Da Isoelectric Point: 8.6169
>NTDB_id=128388 AA973_RS02040 WP_064437417.1 408961..410136(-) (rarA) [Helicobacter pylori strain ausabrJ05]
MSLTSLLNPKSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSQAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLSSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLKKPLNLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSQAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLSSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLKKPLNLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=128388 AA973_RS02040 WP_064437417.1 408961..410136(-) (rarA) [Helicobacter pylori strain ausabrJ05]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTGATAGGGAAAGACACCCC
ATTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTAG
CTCAAATCATCGCTTGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAGGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCAAGCGATTCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTCTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCTCATA
GCTTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTCGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTCTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTTACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAAAAAAACCCCTAAATTTAGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTGATAGGGAAAGACACCCC
ATTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTAG
CTCAAATCATCGCTTGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAGGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCAAGCGATTCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTCTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCTCATA
GCTTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTCGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTCTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTTACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAAAAAAACCCCTAAATTTAGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
36.65 |
100 |
0.386 |