Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   EE66_RS06095 Genome accession   NZ_CP011483
Coordinates   1245564..1245824 (-) Length   86 a.a.
NCBI ID   WP_000602758.1    Uniprot ID   -
Organism   Helicobacter pylori strain DU15     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1240564..1250824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE66_RS08755 - 1241001..1241129 (-) 129 WP_001185489.1 hypothetical protein -
  EE66_RS06085 (EE66_06080) - 1241129..1243060 (-) 1932 WP_064431612.1 type IA DNA topoisomerase -
  EE66_RS06090 (EE66_06085) - 1243053..1245551 (-) 2499 WP_064431344.1 VirB4 family type IV secretion system protein -
  EE66_RS06095 (EE66_06090) comB3 1245564..1245824 (-) 261 WP_000602758.1 hypothetical protein Machinery gene
  EE66_RS06100 (EE66_06095) - 1245825..1246127 (-) 303 WP_000650126.1 TrbC/VirB2 family protein -
  EE66_RS06105 (EE66_06100) - 1246117..1248033 (-) 1917 WP_064431345.1 toprim domain-containing protein -
  EE66_RS06110 (EE66_06105) - 1248044..1248808 (-) 765 WP_064431346.1 hypothetical protein -
  EE66_RS08680 - 1248913..1250212 (+) 1300 Protein_1180 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10184.06 Da        Isoelectric Point: 4.6082

>NTDB_id=128315 EE66_RS06095 WP_000602758.1 1245564..1245824(-) (comB3) [Helicobacter pylori strain DU15]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=128315 EE66_RS06095 WP_000602758.1 1245564..1245824(-) (comB3) [Helicobacter pylori strain DU15]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment