Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   AA971_RS01960 Genome accession   NZ_CP011482
Coordinates   401477..401761 (+) Length   94 a.a.
NCBI ID   WP_064432016.1    Uniprot ID   -
Organism   Helicobacter pylori strain L7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396477..406761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA971_RS01940 (AA971_01940) - 398102..399235 (-) 1134 WP_064432013.1 restriction endonuclease subunit S -
  AA971_RS01945 (AA971_01945) - 399228..400058 (-) 831 Protein_383 N-6 DNA methylase -
  AA971_RS01950 (AA971_01950) - 400109..400897 (+) 789 WP_154815414.1 integrase -
  AA971_RS01955 (AA971_01955) - 401001..401480 (+) 480 WP_064432015.1 hypothetical protein -
  AA971_RS01960 (AA971_01960) comB2 401477..401761 (+) 285 WP_064432016.1 TrbC/VirB2 family protein Machinery gene
  AA971_RS01965 (AA971_01965) comB3 401772..402035 (+) 264 WP_064432017.1 hypothetical protein Machinery gene
  AA971_RS01970 (AA971_01970) - 402047..402283 (+) 237 WP_064432018.1 hypothetical protein -
  AA971_RS01975 (AA971_01975) - 402283..403307 (+) 1025 Protein_389 transporter -
  AA971_RS01980 (AA971_01980) - 403310..404365 (+) 1056 Protein_390 helicase -
  AA971_RS01985 (AA971_01985) - 404498..404707 (+) 210 WP_000462384.1 hypothetical protein -
  AA971_RS01990 (AA971_01990) - 404704..404955 (+) 252 WP_064432020.1 hypothetical protein -
  AA971_RS01995 (AA971_01995) - 405006..405407 (+) 402 WP_180598596.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10722.08 Da        Isoelectric Point: 11.1589

>NTDB_id=128271 AA971_RS01960 WP_064432016.1 401477..401761(+) (comB2) [Helicobacter pylori strain L7]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMGIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=128271 AA971_RS01960 WP_064432016.1 401477..401761(+) (comB2) [Helicobacter pylori strain L7]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCTCTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGTCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGGGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

58.889

95.745

0.564

Multiple sequence alignment