Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PSTEL_RS10790 Genome accession   NZ_CP009286
Coordinates   2392981..2394732 (-) Length   583 a.a.
NCBI ID   WP_038695223.1    Uniprot ID   A0A089LRQ4
Organism   Paenibacillus stellifer strain DSM 14472     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2376779..2394732 2392981..2394732 within 0


Gene organization within MGE regions


Location: 2376779..2394732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSTEL_RS10735 (PSTEL_11265) rfbB 2376779..2377786 (+) 1008 WP_038695210.1 dTDP-glucose 4,6-dehydratase -
  PSTEL_RS10740 - 2377867..2379114 (+) 1248 WP_084064946.1 MFS transporter -
  PSTEL_RS10745 - 2379298..2380179 (+) 882 WP_179944925.1 divergent polysaccharide deacetylase family protein -
  PSTEL_RS10750 (PSTEL_11280) - 2380166..2380888 (-) 723 WP_084064948.1 N-acetylmuramoyl-L-alanine amidase -
  PSTEL_RS10755 (PSTEL_11285) - 2381063..2381263 (+) 201 WP_038695212.1 YqzE family protein -
  PSTEL_RS10760 (PSTEL_11290) - 2381351..2382487 (-) 1137 WP_156995845.1 hypothetical protein -
  PSTEL_RS10765 (PSTEL_11295) - 2382623..2383843 (-) 1221 WP_038695217.1 YqhG family protein -
  PSTEL_RS10770 (PSTEL_11300) - 2383840..2385588 (-) 1749 WP_052098360.1 SNF2-related protein -
  PSTEL_RS10775 (PSTEL_11305) - 2385919..2388606 (+) 2688 WP_038695219.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  PSTEL_RS10780 - 2389103..2390986 (+) 1884 WP_084065419.1 serine hydrolase domain-containing protein -
  PSTEL_RS10785 (PSTEL_11315) rcrQ 2391221..2392981 (-) 1761 WP_038695221.1 ABC transporter ATP-binding protein Regulator
  PSTEL_RS10790 (PSTEL_11320) rcrP 2392981..2394732 (-) 1752 WP_038695223.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63708.92 Da        Isoelectric Point: 5.8716

>NTDB_id=128220 PSTEL_RS10790 WP_038695223.1 2392981..2394732(-) (rcrP) [Paenibacillus stellifer strain DSM 14472]
MVKILKYLNPKEWALFGVSILFIVAQVWLDLELPDYMSEITRLVQTPGGEMSEIISTGGWMLLCALGSLATSIVVAGIAA
RIAANFSSRLRSKLFDKVQSFSMEEINSFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWALLKITGRSWQWSLT
TGIAVGVLILIVGICVVLVLPKFQKLQQLTDNLNRVSRENLTGLRVIRAYNAEGYQEDKFGEANHELTRTNLFANSVLAV
LMPSITMIMSGLSLAIYWVGASLIQAADMSAKMGLFSDMIVFSSYAIQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLSNGSLTASPSKLAGEVEFRNVSFKYPDAEDYVLKDISFTAKKGETVAFIGSTGCGKSTVVNLIPRFYDATEGEVLVD
GINVNQYEQGALRNKMGYVSQKAVLFGGTVTSNIAFGDNGSDVSVEVVDAVYTSQASDFVENMEGSYDAHIAQGGSNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKGARGTTMLIVAQRIGTIKDADKIIVLEDGIIAGMGTHE
ELMNTCSVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=128220 PSTEL_RS10790 WP_038695223.1 2392981..2394732(-) (rcrP) [Paenibacillus stellifer strain DSM 14472]
ATGGTCAAAATACTTAAATACTTGAACCCGAAGGAATGGGCTCTCTTCGGCGTCAGCATTCTCTTCATCGTTGCTCAGGT
GTGGCTGGATCTGGAATTGCCCGATTATATGAGCGAAATTACCCGGCTTGTTCAGACACCGGGAGGCGAAATGAGCGAAA
TTATTTCCACCGGCGGCTGGATGCTGCTCTGTGCACTCGGGAGTCTGGCGACTTCGATCGTTGTAGCCGGCATCGCCGCC
CGGATCGCGGCCAACTTCTCTTCCCGGTTGCGTTCCAAACTCTTCGATAAAGTGCAATCCTTCTCCATGGAGGAAATCAA
CAGCTTCTCTACAGCCAGCTTGATTACCCGCTCGACCAATGACATTACCCAGGTGCAGATGCTGATTGTCATCGGATTGC
AGCTGTTGGTGAAGGCTCCGATCCTTGCGGTGTGGGCGCTGCTCAAGATTACCGGAAGAAGCTGGCAGTGGTCGCTGACG
ACCGGCATTGCCGTCGGTGTGCTCATCCTGATCGTCGGTATTTGCGTCGTGCTCGTACTGCCGAAGTTCCAGAAGCTGCA
GCAGCTGACGGATAACCTGAATCGGGTGTCCCGAGAGAACCTGACCGGACTGCGCGTCATCCGTGCCTATAATGCGGAAG
GCTATCAGGAAGACAAGTTCGGCGAGGCCAACCATGAGCTTACCCGGACGAACCTGTTCGCGAACAGCGTGCTGGCCGTG
CTCATGCCAAGCATTACCATGATTATGAGCGGTCTTAGCCTCGCGATTTATTGGGTAGGCGCGTCATTGATTCAGGCCGC
CGATATGAGCGCCAAAATGGGGCTGTTCTCGGACATGATCGTCTTCTCCTCCTATGCGATCCAGGTCGTTATGGCCTTTA
TGATGCTGATTATGATCTTCATTCTGATGCCCCGCGCCCATGTCTCGGCTAAACGGATCAACGAAGTGCTCGATACGAAG
CCAAGCCTGTCGAATGGATCGCTGACCGCCTCTCCTTCCAAGCTTGCCGGCGAGGTTGAATTCAGAAATGTCAGTTTTAA
ATATCCCGATGCGGAGGATTATGTCCTCAAAGACATCAGCTTTACAGCGAAGAAAGGCGAAACAGTCGCCTTCATCGGTT
CAACCGGCTGCGGCAAAAGCACCGTGGTCAACCTGATCCCCCGTTTCTATGATGCTACCGAAGGAGAAGTGCTCGTCGAC
GGCATCAATGTCAATCAATACGAACAGGGCGCGCTTCGCAACAAGATGGGCTATGTCTCGCAAAAGGCGGTGCTGTTCGG
CGGAACGGTTACTTCCAACATCGCATTTGGCGATAATGGCAGCGATGTTTCCGTCGAAGTGGTGGACGCAGTGTACACCT
CCCAAGCTTCGGATTTCGTCGAGAACATGGAAGGAAGCTATGACGCGCATATCGCTCAGGGCGGCTCCAATCTGTCCGGC
GGCCAGAAGCAGCGGCTGTCCATCGCCCGAGCTATCGCCCGTCGTCCGGAAATTCTGATCTTCGACGATTCCTTCTCCGC
GCTTGACTACAAGACGGACCGCAAACTGCGCAGCGAACTGAAAAAGGGTGCCCGCGGGACCACGATGCTGATTGTCGCCC
AGCGAATCGGCACCATCAAGGATGCGGACAAAATTATCGTGCTGGAAGACGGAATCATCGCCGGCATGGGCACACATGAG
GAATTGATGAACACCTGCAGCGTCTATCAGGAGATTGCCTATTCGCAGCTGTCCAAGGAGGAGTTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-504)

ABC transporter transmembrane region (ABC_membrane)

(18-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089LRQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.51

100

0.527

Multiple sequence alignment