Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PBOR_RS34705 Genome accession   NZ_CP009285
Coordinates   8140521..8141030 (-) Length   169 a.a.
NCBI ID   WP_042218708.1    Uniprot ID   A0A089LR85
Organism   Paenibacillus borealis strain DSM 13188     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8135521..8146030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBOR_RS34690 (PBOR_36070) - 8137319..8139289 (-) 1971 WP_042218704.1 DNA mismatch repair protein MutS -
  PBOR_RS34695 (PBOR_36075) - 8139749..8140123 (-) 375 WP_042218705.1 VOC family protein -
  PBOR_RS34700 (PBOR_36080) rpsR 8140227..8140499 (-) 273 WP_036699837.1 30S ribosomal protein S18 -
  PBOR_RS34705 (PBOR_36085) ssbA 8140521..8141030 (-) 510 WP_042218708.1 single-stranded DNA-binding protein Machinery gene
  PBOR_RS34710 (PBOR_36090) rpsF 8141079..8141363 (-) 285 WP_038598251.1 30S ribosomal protein S6 -
  PBOR_RS34715 (PBOR_36095) - 8141584..8141781 (+) 198 WP_042218709.1 YjzC family protein -
  PBOR_RS34725 (PBOR_36105) - 8142300..8142512 (-) 213 WP_042218710.1 DUF951 domain-containing protein -
  PBOR_RS34730 (PBOR_36110) - 8142512..8143540 (-) 1029 WP_042218711.1 mechanosensitive ion channel domain-containing protein -
  PBOR_RS34735 (PBOR_36115) - 8143533..8143808 (-) 276 WP_042218712.1 DUF3343 domain-containing protein -
  PBOR_RS34740 (PBOR_36120) yyaC 8143914..8144522 (+) 609 WP_042218713.1 spore protease YyaC -
  PBOR_RS34745 (PBOR_36125) - 8144494..8144994 (-) 501 WP_042218714.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18522.29 Da        Isoelectric Point: 4.8280

>NTDB_id=128208 PBOR_RS34705 WP_042218708.1 8140521..8141030(-) (ssbA) [Paenibacillus borealis strain DSM 13188]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSGGSTPEEPAFGGGGNSGNSARGNNNNFSRNNNTQDPFSGDGKPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=128208 PBOR_RS34705 WP_042218708.1 8140521..8141030(-) (ssbA) [Paenibacillus borealis strain DSM 13188]
TTGTTGAACCGTATCATTCTGATCGGTCGCTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAGTTTACGCTTGCCGTAGACCGCAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTTATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTACTTGCGCAAAGGACGACTGGCAGCCGTAGAAGGACGCATCCAAGTACGG
AATTACGAGAATAATGAAGGTAAACGTGTATACGTCACTGAAGTTATTGCTGATAATGTCCGTTTCCTGGAATCCTCGCA
GAACCGTGAAGGCGGAAATGCACCAAGTGGTGGAAGTACTCCCGAAGAGCCTGCCTTTGGTGGCGGCGGTAACAGTGGTA
ACAGTGCACGCGGAAATAACAACAATTTCTCGCGTAACAACAATACTCAAGATCCTTTTTCGGGCGATGGAAAACCGATC
GATATATCGGACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089LR85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

50.867

100

0.521

Multiple sequence alignment