Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AA102_RS08755 Genome accession   NZ_CP011416
Coordinates   1687644..1688111 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN029787     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1682644..1693111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA102_RS08705 (AA102_08700) rplP 1682754..1683164 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  AA102_RS08710 (AA102_08705) rpsC 1683177..1683878 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  AA102_RS08715 (AA102_08710) rplV 1683896..1684228 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  AA102_RS08720 (AA102_08715) rpsS 1684243..1684521 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  AA102_RS08725 (AA102_08720) rplB 1684538..1685359 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  AA102_RS08730 (AA102_08725) rplW 1685377..1685679 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  AA102_RS08735 (AA102_08730) rplD 1685676..1686281 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  AA102_RS08740 (AA102_08735) rplC 1686292..1686921 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  AA102_RS08745 (AA102_08740) rpsJ 1686954..1687265 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  AA102_RS08755 (AA102_08750) pilD 1687644..1688111 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  AA102_RS08760 (AA102_08755) bfr 1688108..1688584 (-) 477 WP_000675515.1 bacterioferritin -
  AA102_RS08765 (AA102_08760) bfd 1688657..1688851 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  AA102_RS08770 (AA102_08765) tuf 1689034..1690218 (-) 1185 WP_000031783.1 elongation factor Tu -
  AA102_RS08775 (AA102_08770) fusA 1690289..1692403 (-) 2115 WP_000124700.1 elongation factor G -
  AA102_RS08780 (AA102_08775) rpsG 1692500..1692970 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=128100 AA102_RS08755 WP_000339836.1 1687644..1688111(+) (pilD) [Escherichia coli strain CFSAN029787]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=128100 AA102_RS08755 WP_000339836.1 1687644..1688111(+) (pilD) [Escherichia coli strain CFSAN029787]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361