Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SpyM6D471_RS07080 Genome accession   NZ_CP011415
Coordinates   1404395..1405177 (-) Length   260 a.a.
NCBI ID   WP_002983278.1    Uniprot ID   A2RCV3
Organism   Streptococcus pyogenes strain D471     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1399395..1410177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SpyM6D471_RS07055 (SpyM6D471_07050) gatB 1399493..1400932 (-) 1440 WP_011184879.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  SpyM6D471_RS07060 (SpyM6D471_07055) gatA 1400932..1402398 (-) 1467 WP_011184880.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SpyM6D471_RS07065 (SpyM6D471_07060) gatC 1402398..1402700 (-) 303 WP_002988561.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SpyM6D471_RS07070 (SpyM6D471_07065) - 1402932..1403195 (-) 264 WP_002983284.1 putative PEP-binding protein -
  SpyM6D471_RS07075 (SpyM6D471_07070) - 1403694..1404248 (-) 555 WP_010922604.1 cysteine hydrolase family protein -
  SpyM6D471_RS07080 (SpyM6D471_07075) codY 1404395..1405177 (-) 783 WP_002983278.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SpyM6D471_RS07085 (SpyM6D471_07080) - 1405395..1406609 (-) 1215 WP_011184883.1 pyridoxal phosphate-dependent aminotransferase -
  SpyM6D471_RS07090 (SpyM6D471_07085) - 1406840..1407292 (+) 453 WP_002983265.1 universal stress protein -
  SpyM6D471_RS07095 (SpyM6D471_07090) - 1407415..1408803 (-) 1389 WP_010922607.1 Cof-type HAD-IIB family hydrolase -
  SpyM6D471_RS07100 (SpyM6D471_07095) - 1408875..1409840 (+) 966 WP_011184885.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28633.76 Da        Isoelectric Point: 4.5611

>NTDB_id=128047 SpyM6D471_RS07080 WP_002983278.1 1404395..1405177(-) (codY) [Streptococcus pyogenes strain D471]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDTYPGGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEDTIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFAKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=128047 SpyM6D471_RS07080 WP_002983278.1 1404395..1405177(-) (codY) [Streptococcus pyogenes strain D471]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATCACATCTATTTTGCAGCGTTCCGTAGATAGCCTAGAAACAGAATTACC
GTATAACACAATGGCATCTCGCCTAGCAGATATCATTGACTGCAATGCTTGTATTATCAATGGCGGCGGCACACTGCTTG
GTTATGCCATGAAATATAAAACTAACACTGATCGTGTTGAGGAATTTTTTGAAGCTAAACAATTTCCAGATACTTATGTA
AAGGCTGCTAGCCGAGTTTACGATACAGAAGCTAACCTTTCTGTCGAAAATGAATTGACTATATTCCCTGTTGAGTCTAA
AGACACTTATCCAGGAGGTCTAACGACTATTGCGCCGATTTATGGTGGAGGGATGCGCCTTGGATCACTCATTATCTGGC
GTAATGACAATGAGTTTAGTGATGATGATTTGATTTTGGTTGAGATCTCAAGTACTGTTGTGGGGATTCAACTATTAAAT
CTTCAGACAGAAAACTTAGAAGACACCATCCGTAAACAAACAGCGGTCAACATGGCAATTAATACGCTTTCTTATTCAGA
AATGAAAGCTGTTGCAGCAATTCTTGGAGAGTTAGATGGTAATGAAGGACGATTGACAGCTTCTGTTATTGCTGATCGTA
TTGGTATTACCCGTTCTGTTATTGTCAATGCTCTGCGTAAACTAGAAAGTGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGGACATACCTCAAAGTTATCAACGAAGGTATTTTTGCTAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RCV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

51.373

98.077

0.504

Multiple sequence alignment