Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   P40081_RS25270 Genome accession   NZ_CP009280
Coordinates   5903360..5905126 (+) Length   588 a.a.
NCBI ID   WP_042138981.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL P4-0081     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5898360..5910126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P40081_RS25255 (P40081_26345) - 5899229..5900293 (-) 1065 WP_042141447.1 suppressor of fused domain protein -
  P40081_RS25260 (P40081_26350) - 5900494..5901051 (+) 558 WP_042138977.1 SMI1/KNR4 family protein -
  P40081_RS25265 (P40081_26355) rcrP 5901603..5903360 (+) 1758 WP_042138979.1 ABC transporter ATP-binding protein Regulator
  P40081_RS25270 (P40081_26360) rcrQ 5903360..5905126 (+) 1767 WP_042138981.1 ABC transporter ATP-binding protein Regulator
  P40081_RS25275 (P40081_26365) - 5905217..5906806 (-) 1590 WP_042138982.1 sensor domain-containing diguanylate cyclase -
  P40081_RS25280 (P40081_26370) - 5906969..5907931 (-) 963 WP_042138983.1 alpha/beta fold hydrolase -
  P40081_RS25285 (P40081_26375) - 5907960..5908985 (-) 1026 WP_042138984.1 glycoside hydrolase family 130 protein -
  P40081_RS25290 (P40081_26380) - 5909009..5909842 (-) 834 WP_042138985.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64084.29 Da        Isoelectric Point: 6.6129

>NTDB_id=128026 P40081_RS25270 WP_042138981.1 5903360..5905126(+) (rcrQ) [Paenibacillus sp. FSL P4-0081]
MKMKTKAKGQNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLLGPDMLSEITDKITAGLAGGIDMDGIAAIGITLVVIYA
ISAVLSLSQGLIMSNITQKVSKKLRTDLAHKMNRLPISYYNKSATGDILSRVTNDVDTIGQAMNQSIGTVVTAVAMFIGS
IIMMLRTNVIMTLTSIVATIIGFGLMAVIMKKSQKYFASQQEFLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQG
LKNSAFKAQFLSGLMPPLMGFIGNLGFVAVCVVGAVLALDGTISFGVIVAFIMYVRYFTQPLSQIAQAAQNLQSASAAGG
RVFEFLEEAEMEDETRKENTLATAAGKVSFDQVKFAYDNSGNLVIKNFSTEVKPGQKVAIVGPTGAGKTTLVNLLIRFNE
LTGGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLIYNQQNITDEKLVEACKAVGLHRFIQSLSDGYDTVLN
DKVNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDI
LESGSHTELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=128026 P40081_RS25270 WP_042138981.1 5903360..5905126(+) (rcrQ) [Paenibacillus sp. FSL P4-0081]
ATGAAGATGAAAACCAAAGCTAAAGGACAGAATACCTGGAGCAAGCTGCTCCGTTACTGCCGTAAATACGTTCCGGTGAT
CGTCATTGCGCTGATCTGCGCGGCGGCCGGAACCGTGCTCACCCTGCTCGGTCCGGATATGCTCTCCGAGATTACGGACA
AAATCACTGCCGGTCTCGCAGGCGGGATCGATATGGACGGCATTGCAGCCATCGGCATTACCCTCGTCGTGATCTACGCC
ATCAGTGCGGTGCTCTCACTCTCGCAGGGCCTGATCATGTCGAATATTACCCAGAAGGTCTCCAAGAAATTAAGAACCGA
TCTGGCTCATAAGATGAACCGGCTTCCGATCTCCTACTATAATAAGTCGGCCACAGGGGACATCCTCTCCCGGGTAACGA
ATGATGTGGATACCATCGGCCAGGCAATGAATCAGAGCATAGGTACAGTCGTAACTGCCGTAGCCATGTTCATCGGTTCG
ATCATCATGATGCTCCGGACCAATGTAATTATGACCCTTACCTCTATCGTAGCGACAATCATCGGCTTCGGCCTGATGGC
GGTTATTATGAAGAAATCGCAGAAGTATTTTGCCAGCCAGCAGGAATTCTTGGGCAAAATCAACGGTCATGTTGAGGAAG
TCTATACCGGACATAACGTTGTAAAAGCCTACAACGGTGAAGCGCAGATGCGCACCACCTTCCAGGAATTAAATCAGGGA
TTGAAGAACAGCGCCTTCAAAGCGCAATTCCTCTCCGGACTGATGCCGCCGCTGATGGGCTTTATCGGTAATCTCGGTTT
CGTCGCCGTCTGTGTCGTTGGCGCTGTACTGGCCTTGGATGGAACTATCTCCTTCGGGGTTATCGTCGCCTTCATTATGT
ATGTTCGTTACTTCACCCAGCCGTTATCCCAGATCGCCCAGGCCGCGCAGAACCTGCAATCGGCATCAGCCGCAGGCGGA
CGCGTGTTTGAATTCCTCGAAGAAGCAGAAATGGAAGACGAGACCCGCAAAGAGAACACACTGGCAACAGCGGCAGGCAA
AGTAAGCTTTGACCAGGTGAAATTCGCTTACGATAATTCCGGGAACCTGGTGATCAAAAACTTCTCGACAGAAGTGAAGC
CGGGGCAAAAGGTGGCCATCGTCGGCCCGACCGGCGCAGGCAAAACTACGCTCGTCAATCTGCTCATCCGCTTCAACGAG
CTGACCGGCGGAGAAATCTACATCGATGACACACCGATCAGCAGTCTGACGAGGGAGAACATCCACGATTTGTTCTGCAT
GGTGCTGCAGGATACCTGGCTGTTTGAAGGCACAATCAGGGAGAACCTGATCTACAATCAGCAGAATATCACGGACGAGA
AGCTTGTAGAAGCCTGCAAGGCGGTTGGCCTGCACCGCTTCATTCAGAGCCTTAGCGACGGATATGATACCGTCCTGAAC
GATAAGGTCAACCTGTCCGCCGGACAAAAGCAGCAGCTGACCATTGCCCGCGCGATGCTGAAGGATGCACCGATGCTCAT
TCTTGACGAAGCTACCAGCTCCGTGGATACCCGGACTGAGCTGCTGATTCAGCAGGCGATGGATCAGCTAATGGAGGGCA
GAACCTCCTTCGTCATCGCCCACCGGCTGTCCACGATCAAGAACGCCGATGTGATTCTGGTCCTGAAGGACGGCGATATC
CTGGAAAGCGGCAGCCATACAGAATTGCTGGCGAAGAACGGATTCTATGCAGAGCTGTATAACAGCCAGTTTGAGCAGGC
TTCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(28-302)

ABC transporter (ABC_tran)

(366-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.786

98.469

0.549

Multiple sequence alignment