Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JV59_RS14790 Genome accession   NZ_CP009264
Coordinates   3170566..3171270 (-) Length   234 a.a.
NCBI ID   WP_038514103.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain OCN014     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3165566..3176270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS14770 (JV59_38795) recG 3166181..3168259 (+) 2079 WP_038514099.1 ATP-dependent DNA helicase RecG -
  JV59_RS14775 (JV59_38800) cysQ 3168351..3169178 (-) 828 WP_006957188.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JV59_RS14780 (JV59_38805) nudE 3169205..3169753 (-) 549 WP_019276595.1 ADP compounds hydrolase NudE -
  JV59_RS14785 (JV59_38810) nfuA 3169885..3170472 (-) 588 WP_006957194.1 Fe-S biogenesis protein NfuA -
  JV59_RS14790 (JV59_38815) comF 3170566..3171270 (-) 705 WP_038514103.1 ComF family protein Machinery gene
  JV59_RS14795 (JV59_38820) bioH 3171329..3172126 (+) 798 WP_038514105.1 pimeloyl-ACP methyl ester esterase BioH -
  JV59_RS14800 (JV59_38825) - 3172236..3172706 (+) 471 WP_006957199.1 hypothetical protein -
  JV59_RS14805 (JV59_38830) - 3172779..3175106 (-) 2328 WP_038514107.1 Tex family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27167.70 Da        Isoelectric Point: 8.5366

>NTDB_id=127869 JV59_RS14790 WP_038514103.1 3170566..3171270(-) (comF) [Vibrio coralliilyticus strain OCN014]
MLTDWIKKHTAYLLPSHCDLCQMAIGAQAAHPLFCCFCLRRFAPVPRCRRCGLVTPEYVEMCGECLVAPPLWTHLYCVGD
YQPPLSSYVHRLKYEGQYWQAKTLSLLLVSRIDTRPDLITFVPLHWRRYCYRGYNQSQHLAWQIGRELDVPCEALFKKKR
ATERQQGMDKKQRKENVRQAFHLRKSINIEHVAIVDDVLTTGSTVHQLCELLLDAGVKTIDIYCICRTPEPSSR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=127869 JV59_RS14790 WP_038514103.1 3170566..3171270(-) (comF) [Vibrio coralliilyticus strain OCN014]
ATGTTAACCGATTGGATTAAGAAACACACAGCCTACCTGTTACCCAGTCATTGCGATTTGTGCCAGATGGCGATCGGAGC
GCAAGCGGCGCACCCCTTATTCTGCTGTTTCTGTCTGCGACGTTTTGCGCCAGTTCCTCGCTGCAGACGATGTGGCTTGG
TGACCCCTGAGTACGTCGAAATGTGTGGGGAATGTTTAGTTGCCCCGCCATTGTGGACGCACTTGTATTGTGTCGGAGAC
TATCAACCGCCGCTATCGAGTTACGTTCACCGACTTAAGTACGAAGGTCAGTACTGGCAGGCTAAAACCTTGTCTTTGCT
GTTGGTGTCACGCATCGACACTCGACCAGACCTGATTACTTTTGTCCCCTTGCACTGGCGTCGTTACTGTTATCGTGGCT
ACAACCAAAGTCAGCATCTGGCATGGCAAATTGGTCGAGAGCTGGATGTGCCTTGTGAGGCTCTATTTAAGAAAAAGCGT
GCAACGGAAAGGCAACAAGGAATGGATAAAAAGCAGCGTAAGGAGAATGTGCGTCAGGCTTTTCATCTAAGAAAGTCGAT
AAATATCGAGCATGTCGCTATTGTCGATGATGTGCTAACTACAGGCAGTACCGTGCATCAATTATGTGAATTATTGCTCG
ATGCTGGAGTGAAAACCATTGATATTTATTGCATTTGTCGCACTCCTGAACCTTCTAGCCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

51.293

99.145

0.509
  comF Vibrio campbellii strain DS40M4

46.053

97.436

0.449

Multiple sequence alignment