Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VV93_RS23155 Genome accession   NZ_CP009261
Coordinates   233417..234127 (-) Length   236 a.a.
NCBI ID   WP_039552248.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 228417..239127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS01095 (VV93_v1c02040) gspL 228588..229787 (+) 1200 WP_039552232.1 type II secretion system protein GspL -
  VV93_RS01100 (VV93_v1c02050) - 229795..230286 (+) 492 WP_039552236.1 type II secretion system protein M -
  VV93_RS01105 (VV93_v1c02060) - 230288..231049 (+) 762 WP_039552239.1 type II secretion system protein N -
  VV93_RS01110 (VV93_v1c02070) cysQ 231190..232017 (-) 828 WP_039552241.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VV93_RS01115 (VV93_v1c02080) nudE 232032..232586 (-) 555 WP_039552244.1 ADP compounds hydrolase NudE -
  VV93_RS01120 (VV93_v1c02090) nfuA 232702..233286 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  VV93_RS23155 (VV93_v1c02100) comF 233417..234127 (-) 711 WP_039552248.1 ComF family protein Machinery gene
  VV93_RS01130 (VV93_v1c02110) bioH 234216..234983 (+) 768 WP_013572568.1 pimeloyl-ACP methyl ester esterase BioH -
  VV93_RS01135 (VV93_v1c02120) - 235121..235591 (+) 471 WP_039552251.1 hypothetical protein -
  VV93_RS01140 (VV93_v1c02130) - 235674..237998 (-) 2325 WP_039552254.1 Tex family protein -
  VV93_RS01145 (VV93_v1c02140) greB 238234..238716 (+) 483 WP_013572566.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27250.00 Da        Isoelectric Point: 9.8519

>NTDB_id=127836 VV93_RS23155 WP_039552248.1 233417..234127(-) (comF) [Vibrio vulnificus strain 93U204]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=127836 VV93_RS23155 WP_039552248.1 233417..234127(-) (comF) [Vibrio vulnificus strain 93U204]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTTTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTATTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAACGCAACTTAGCGGGTGCCTTTCGCCTCAATCGCTCAGC
TTTACCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment