Detailed information NTG0127835

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: FORC14_RS06345
• Genome accession: NZ_CP011406
• Coordinates: 1371222..1372511 (+)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_014
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1366222..1377511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC14_RS06330 (FORC14_1218)	lrp	1366721..1367215 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
FORC14_RS06335 (FORC14_1219)	-	1367368..1370454 (+)	3087	WP_063517345.1	DNA translocase FtsK	-
FORC14_RS06340 (FORC14_1220)	lolA	1370529..1371155 (+)	627	WP_023585423.1	outer membrane lipoprotein chaperone LolA	-
FORC14_RS06345 (FORC14_1221)	rarA	1371222..1372511 (+)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
FORC14_RS06350 (FORC14_1222)	serS	1372603..1373910 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
FORC14_RS06355 (FORC14_1223)	-	1373996..1375012 (+)	1017	WP_079400603.1	N-acetylmuramidase domain-containing protein	-
FORC14_RS27075 (FORC14_1224)	-	1374987..1375430 (+)	444	WP_079771436.1	hypothetical protein	-
FORC14_RS06365 (FORC14_1225)	-	1375565..1375831 (+)	267	WP_063517347.1	DksA/TraR family C4-type zinc finger protein	-
FORC14_RS06370 (FORC14_1226)	bioA	1375901..1377181 (-)	1281	WP_063517348.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=127835 FORC14_RS06345 WP_021447448.1 1371222..1372511(+) (rarA) [Vibrio parahaemolyticus strain FORC_014]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=127835 FORC14_RS06345 WP_021447448.1 1371222..1372511(+) (rarA) [Vibrio parahaemolyticus strain FORC_014]
ATGAGACCGCAAACTATCGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGTGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCTGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGGTTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCGATGCAAG
TTGCTCTTTCCGCGTGGGACTGCTTTACACGCGTTGGTCCAGCTGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCTGCGGGTGAGCAATATTTGCCACCAGAAATGGCAGATCGTAAGTACTATCAGCCGACA
AATCGCGGCCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385