Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB4   Type   Machinery gene
Locus tag   YH61_RS07965 Genome accession   NZ_CP011330
Coordinates   1682229..1682426 (-) Length   65 a.a.
NCBI ID   WP_046655419.1    Uniprot ID   -
Organism   Helicobacter pylori J99     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1677229..1687426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YH61_RS07940 (YH61_07935) - 1677255..1679500 (-) 2246 Protein_1555 type IV secretory system conjugative DNA transfer family protein -
  YH61_RS07945 (YH61_07940) - 1679497..1680015 (-) 519 WP_046655416.1 replication regulatory RepB family protein -
  YH61_RS07950 (YH61_07945) - 1680012..1680956 (-) 945 WP_046655417.1 CpaF/VirB11 family protein -
  YH61_RS07955 (YH61_07950) - 1680961..1681237 (-) 277 Protein_1558 hypothetical protein -
  YH61_RS07960 (YH61_07955) - 1681254..1682216 (-) 963 WP_046655418.1 hypothetical protein -
  YH61_RS07965 (YH61_07960) comB4 1682229..1682426 (-) 198 WP_046655419.1 hypothetical protein Machinery gene
  YH61_RS07970 (YH61_07965) - 1682426..1682659 (-) 234 WP_046655420.1 hypothetical protein -
  YH61_RS07975 (YH61_07970) - 1682671..1683372 (-) 702 WP_052733214.1 hypothetical protein -
  YH61_RS07980 (YH61_07975) - 1684196..1684654 (+) 459 Protein_1563 hypothetical protein -
  YH61_RS07985 (YH61_07980) - 1684727..1685530 (-) 804 WP_000377489.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  YH61_RS07990 (YH61_07985) - 1685500..1685970 (-) 471 WP_000965787.1 hypothetical protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7483.46 Da        Isoelectric Point: 4.5348

>NTDB_id=127554 YH61_RS07965 WP_046655419.1 1682229..1682426(-) (comB4) [Helicobacter pylori J99]
MFENALKYCKEKAIDLLTGFVPKTYSMTEECNILGLYDDTFIITKQENNANYSCASHNNWIVPNN

Nucleotide


Download         Length: 198 bp        

>NTDB_id=127554 YH61_RS07965 WP_046655419.1 1682229..1682426(-) (comB4) [Helicobacter pylori J99]
ATGTTTGAAAACGCTCTTAAATATTGTAAAGAAAAAGCCATAGACCTTTTAACAGGTTTTGTTCCAAAAACCTATTCTAT
GACAGAGGAATGCAATATTTTAGGTTTGTATGATGATACTTTCATCATCACTAAACAAGAAAATAATGCTAATTACTCAT
GCGCTTCGCACAACAATTGGATTGTCCCAAACAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB4 Helicobacter pylori 26695

52.083

73.846

0.385

Multiple sequence alignment