Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SAH002_RS09830 Genome accession   NZ_CP011329
Coordinates   1965838..1967106 (+) Length   422 a.a.
NCBI ID   WP_000774760.1    Uniprot ID   Q8DX76
Organism   Streptococcus agalactiae strain H002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1960838..1972106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAH002_RS09795 (SAH002_09810) prmA 1961234..1962187 (-) 954 WP_001099294.1 50S ribosomal protein L11 methyltransferase -
  SAH002_RS09800 (SAH002_09815) - 1962184..1962648 (-) 465 WP_306341185.1 MepB family protein -
  SAH002_RS09805 (SAH002_09820) - 1962766..1963482 (+) 717 WP_000859573.1 MerR family transcriptional regulator -
  SAH002_RS09810 (SAH002_09825) - 1963521..1963991 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  SAH002_RS09815 (SAH002_09830) - 1963963..1964421 (-) 459 WP_000350744.1 NUDIX hydrolase -
  SAH002_RS09820 (SAH002_09835) - 1964557..1965027 (-) 471 WP_001051348.1 DUF3013 family protein -
  SAH002_RS09825 (SAH002_09840) - 1965354..1965845 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  SAH002_RS09830 (SAH002_09845) rarA 1965838..1967106 (+) 1269 WP_000774760.1 replication-associated recombination protein A Machinery gene
  SAH002_RS09840 (SAH002_09855) - 1967561..1968682 (-) 1122 WP_000257253.1 site-specific integrase -
  SAH002_RS09845 (SAH002_09860) - 1968732..1969058 (-) 327 WP_050882012.1 DUF771 domain-containing protein -
  SAH002_RS09850 (SAH002_09865) - 1969259..1970425 (-) 1167 WP_000282289.1 XRE family transcriptional regulator -
  SAH002_RS09855 (SAH002_09870) - 1970446..1971153 (-) 708 WP_000418710.1 hypothetical protein -
  SAH002_RS09860 (SAH002_09875) - 1971279..1972058 (-) 780 WP_000048875.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46572.99 Da        Isoelectric Point: 6.3530

>NTDB_id=127502 SAH002_RS09830 WP_000774760.1 1965838..1967106(+) (rarA) [Streptococcus agalactiae strain H002]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQCSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=127502 SAH002_RS09830 WP_000774760.1 1965838..1967106(+) (rarA) [Streptococcus agalactiae strain H002]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGTGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DX76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588

Multiple sequence alignment