Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JO40_RS15305 Genome accession   NZ_CP009228
Coordinates   771055..771222 (-) Length   55 a.a.
NCBI ID   WP_420832878.1    Uniprot ID   -
Organism   Treponema putidum strain OMZ 758 (ATCC 700334)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 766055..776222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JO40_RS03490 (JO40_03655) ileS 766223..769525 (-) 3303 WP_044978019.1 isoleucine--tRNA ligase -
  JO40_RS03495 (JO40_03665) - 769725..770300 (+) 576 WP_044978021.1 glucosaminidase domain-containing protein -
  JO40_RS13845 - 770722..770865 (-) 144 WP_158506566.1 hypothetical protein -
  JO40_RS15305 rcrQ 771055..771222 (-) 168 WP_420832878.1 hypothetical protein Regulator
  JO40_RS03505 (JO40_03690) - 771346..771651 (-) 306 WP_044978023.1 hypothetical protein -
  JO40_RS03510 (JO40_03695) - 771785..772357 (-) 573 WP_044978024.1 TetR/AcrR family transcriptional regulator -
  JO40_RS03515 (JO40_03705) - 772703..774982 (+) 2280 WP_044978026.1 AAA family ATPase -
  JO40_RS03520 (JO40_03710) - 775272..775874 (+) 603 WP_158506567.1 PD-(D/E)XK nuclease family protein -

Sequence

Protein


Download         Length: 55 a.a.        Molecular weight: 6147.20 Da        Isoelectric Point: 5.7003

>NTDB_id=127393 JO40_RS15305 WP_420832878.1 771055..771222(-) (rcrQ) [Treponema putidum strain OMZ 758 (ATCC 700334)]
MDKMTSNVDPVNEALIQEAITELSKNRTVLVIAHLKTIQQADQILVFRKGGLIEI

Nucleotide


Download         Length: 168 bp        

>NTDB_id=127393 JO40_RS15305 WP_420832878.1 771055..771222(-) (rcrQ) [Treponema putidum strain OMZ 758 (ATCC 700334)]
TTGGATAAGATGACTAGCAATGTCGATCCCGTAAACGAAGCACTTATACAAGAAGCAATTACGGAGCTTTCAAAAAACAG
AACGGTACTGGTTATCGCACATCTAAAGACTATTCAACAAGCGGATCAAATTCTCGTCTTCCGAAAGGGCGGCCTTATCG
AAATATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.727

100

0.527

Multiple sequence alignment