Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PLANO_RS06440 Genome accession   NZ_CP009129
Coordinates   1273641..1276058 (+) Length   805 a.a.
NCBI ID   WP_038703647.1    Uniprot ID   A0A0B4RB29
Organism   Planococcus sp. PAMC 21323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1268641..1281058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLANO_RS06415 (Plano_1231) - 1268684..1269973 (-) 1290 WP_038703642.1 replication-associated recombination protein A -
  PLANO_RS06420 (Plano_1232) - 1270249..1270665 (+) 417 WP_038703643.1 Rrf2 family transcriptional regulator -
  PLANO_RS06425 (Plano_1233) - 1270680..1271813 (+) 1134 WP_038703644.1 cysteine desulfurase family protein -
  PLANO_RS06430 (Plano_1234) mnmA 1271827..1272942 (+) 1116 WP_038703645.1 tRNA 2-thiouridine(34) synthase MnmA -
  PLANO_RS06435 (Plano_1235) - 1272957..1273616 (+) 660 WP_038703646.1 tetratricopeptide repeat protein -
  PLANO_RS06440 (Plano_1236) recD2 1273641..1276058 (+) 2418 WP_038703647.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PLANO_RS06445 (Plano_1237) alaS 1276603..1279227 (+) 2625 WP_038703648.1 alanine--tRNA ligase -
  PLANO_RS06450 (Plano_1238) - 1279317..1279583 (+) 267 WP_038705389.1 IreB family regulatory phosphoprotein -
  PLANO_RS06455 (Plano_1239) ruvX 1279586..1280002 (+) 417 WP_038703649.1 Holliday junction resolvase RuvX -
  PLANO_RS06460 (Plano_1240) - 1280016..1280330 (+) 315 WP_038703650.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 89893.04 Da        Isoelectric Point: 5.0048

>NTDB_id=127026 PLANO_RS06440 WP_038703647.1 1273641..1276058(+) (recD2) [Planococcus sp. PAMC 21323]
MTGQIDLFQEEKQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTPYTEKEIIVSGYFPMLTLEEQYRFTGVVKNHPRYGVQ
FQVETFTKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPDSLDKVPRLSDDKKDTIRATLQMNLGL
ERVMIQLNDWGFGPQIGMRIYQAYREETIDILTKNPFQLIEEIEGIGFQRADELGMKLGITGSHPDRIKASILHILNQAS
LSDGHVYVDAKTLIPMVKELLEARQQAEIPIEAISKAAIELNEEGKVAGEETRLYLPSLYYSEVGIATKLETLLLEQESR
TKFPSSEVRKALGEAEERLGVNYAETQVDAIESSINSSVMILTGGPGTGKTTVVRGLVEIYAELHGLSLDPKEYAKKQEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPEDAQLIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQSSGSSIIELAHQMKNGQLPEDITAKTADRSFIKAGADQIPLVVEK
VVKSALSKGHSIKDIQVLAPMYKGPAGIDALNRLIQEMVNPNPDGKRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDMLVASFDGIEVTYERSDLNQLTLAYCCSIHKSQGSEFPTVIMPIVRGYMKMLRRNLLYTGITRS
KDFLVLCGDPGAFRYGVERTDDTQRMTTLQSRLAVTTEEPKTEQQTKQQEETKQSGPVSLTTENAHAIHPMIGMEGITPQ
KFMEA

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=127026 PLANO_RS06440 WP_038703647.1 1273641..1276058(+) (recD2) [Planococcus sp. PAMC 21323]
ATGACCGGACAAATCGATTTATTTCAAGAAGAAAAACAATTTGTATTAGGGCGTCCTGTCGTCTCGATTTTTCATAATCC
CCAAAATTTATTCTCCATCGCGAAAGTAAAGATCCAAGAAACCAACACCCCTTATACCGAAAAAGAAATCATTGTATCGG
GCTATTTCCCAATGCTGACACTTGAAGAGCAATACCGTTTTACAGGTGTCGTAAAAAATCATCCGCGTTACGGCGTTCAA
TTTCAAGTGGAAACTTTTACGAAAGAAGTACCTGAAACCGAACAAGGTATCATTCATTATTTATCGAGTGATATGTTTAA
TGGCATTGGTCGGAAAACAGCGGAAACGATCGTGAAAAAATTAGGCAAAGATGCTATTAAAAAGATTTTAGAAGACCCGG
ATTCCTTAGATAAAGTTCCGCGTTTGTCCGATGACAAAAAAGACACCATCCGCGCAACGCTTCAAATGAACTTAGGGCTT
GAACGTGTGATGATTCAATTAAATGATTGGGGCTTTGGTCCACAAATTGGTATGCGTATTTATCAAGCATATCGAGAAGA
AACGATTGATATTTTAACGAAAAACCCCTTTCAATTGATTGAAGAAATTGAAGGAATTGGTTTTCAACGTGCCGATGAAC
TGGGGATGAAGCTAGGCATTACAGGCAGTCACCCGGATCGAATTAAGGCATCTATTTTACATATCTTGAATCAAGCTTCG
CTATCGGATGGACATGTGTATGTCGATGCGAAGACCTTAATTCCTATGGTTAAAGAATTGCTTGAAGCGCGTCAGCAAGC
AGAGATTCCGATTGAGGCAATCTCTAAAGCGGCAATCGAGTTAAATGAAGAAGGAAAAGTAGCTGGAGAAGAAACCCGGC
TTTATTTGCCATCTCTTTATTACTCAGAAGTCGGTATCGCAACGAAATTAGAGACCTTATTATTAGAACAGGAATCACGC
ACAAAGTTCCCGAGTTCAGAAGTTCGAAAAGCACTCGGTGAAGCGGAAGAGCGGCTAGGGGTTAATTACGCCGAAACACA
AGTGGACGCAATTGAAAGCAGCATCAATTCATCGGTTATGATTTTGACAGGTGGGCCGGGAACAGGGAAAACGACGGTCG
TTCGGGGACTGGTAGAAATTTATGCCGAGCTGCACGGGTTGTCACTCGATCCAAAAGAATACGCGAAAAAACAAGAGCCG
TTTCCAATCATACTCGCTGCGCCAACAGGACGTGCGGCCAAGCGCTTGAGTGAATCAACTGAGCTACCGGCCATGACGAT
TCACCGCTTACTCGGCTTTAACGGCCAAGAAAAAGATGAGGAAACAGAGAAGGAAATTGAAGGCAAGTTGATCATTATTG
ATGAAATGTCAATGGTCGATACGTGGCTTGCCCATCAATTATTAAAAGCAGTGCCAGAAGATGCACAATTGATTTTCGTC
GGGGACCAAGATCAATTGCCGCCCGTTGGACCAGGACAAGTATTGCGAGATTTACTCGAATCAAAACGTATTCCAACAGT
AGAATTAACCGACATTTACCGACAATCTTCAGGTTCATCGATAATAGAACTCGCGCACCAAATGAAAAATGGGCAATTGC
CAGAAGACATTACAGCGAAAACTGCAGACCGTTCTTTTATAAAAGCCGGCGCTGATCAAATTCCTTTAGTTGTTGAAAAA
GTTGTGAAAAGCGCTTTATCCAAAGGGCATTCGATTAAAGACATTCAAGTGCTAGCACCCATGTACAAAGGACCTGCTGG
AATTGATGCTTTAAACCGCCTGATTCAAGAAATGGTCAACCCAAATCCTGATGGTAAACGAAAAGAGCTAGTGTTCGGGG
ACATCACCTACCGCATAGGTGATAAAATATTACAACTGGTCAATCAACCTGAAAGCAATGTCTTTAACGGGGATATGGGT
GAAGTTGTTGCTATCATGAAAGCGAAAGAAACGGTTGAAAAACAAGATATGTTAGTGGCTTCCTTTGATGGCATCGAAGT
TACTTACGAACGAAGTGACTTAAACCAATTAACATTAGCTTACTGTTGTTCAATCCATAAATCGCAAGGCTCGGAGTTTC
CAACTGTTATTATGCCGATTGTTCGAGGCTATATGAAAATGTTGCGACGTAATTTGCTTTATACAGGAATTACCCGCAGT
AAAGACTTTCTCGTGCTATGCGGGGACCCAGGAGCATTCCGCTATGGTGTTGAACGAACAGATGACACGCAGCGCATGAC
AACCTTGCAAAGTCGTCTAGCGGTCACGACAGAAGAACCGAAAACTGAACAGCAAACAAAACAACAAGAAGAAACAAAAC
AAAGCGGCCCAGTCAGCTTAACAACCGAAAACGCCCACGCCATTCACCCAATGATCGGCATGGAAGGCATTACTCCGCAA
AAGTTTATGGAAGCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B4RB29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.14

99.13

0.557

Multiple sequence alignment