Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   WV34_RS19825 Genome accession   NZ_CP011252
Coordinates   3887945..3888796 (-) Length   283 a.a.
NCBI ID   WP_014471333.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3882945..3893796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS19800 (WV34_19295) - 3883103..3885106 (-) 2004 WP_088613798.1 molybdopterin-dependent oxidoreductase -
  WV34_RS19805 (WV34_19300) - 3885153..3885359 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  WV34_RS19810 (WV34_19305) - 3885445..3886449 (-) 1005 WP_045513373.1 membrane protein -
  WV34_RS19815 (WV34_19310) - 3886623..3887126 (+) 504 WP_088613799.1 GNAT family N-acetyltransferase -
  WV34_RS19820 (WV34_19315) yyaC 3887301..3887915 (+) 615 WP_013354269.1 spore protease YyaC -
  WV34_RS19825 (WV34_19320) spo0J 3887945..3888796 (-) 852 WP_014471333.1 ParB/RepB/Spo0J family partition protein Regulator
  WV34_RS19830 (WV34_19325) soj 3888789..3889550 (-) 762 WP_088613800.1 sporulation initiation inhibitor protein Soj -
  WV34_RS19835 (WV34_19330) noc 3889849..3890700 (-) 852 WP_007615083.1 nucleoid occlusion protein -
  WV34_RS19840 (WV34_19335) rsmG 3890822..3891541 (-) 720 WP_088613801.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  WV34_RS19845 (WV34_19340) mnmG 3891555..3893441 (-) 1887 WP_004392959.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 32338.29 Da        Isoelectric Point: 8.3472

>NTDB_id=126873 WV34_RS19825 WP_014471333.1 3887945..3888796(-) (spo0J) [Bacillus amyloliquefaciens strain MT45]
MAKGGLGKGINALFNQVDLSEETVEEIKISDLRPNPYQPRKQFDDESLAELKESIIQHGILQPIIVRKSLKGYDIVAGER
RYRAAKLAGKETVPAIVRELSESLMREIALLENLQREDLSPLEEALAYDSLLKHLDITQEQLAKRLGKSRPHIANHLRLL
TLPESIQNLIAEGTLSMGHGRTLLGLKNKNKLEPLVKKVVEEQLNVRQLEQLIQQLNSNVPRETKKKEPVQDVVLKERES
YLQNYFGTTVNIKRQKKKGKIEIEFFSNEDLERILELLSEREA

Nucleotide


Download         Length: 852 bp        

>NTDB_id=126873 WV34_RS19825 WP_014471333.1 3887945..3888796(-) (spo0J) [Bacillus amyloliquefaciens strain MT45]
ATGGCTAAAGGCGGGCTCGGAAAAGGGATTAATGCGTTGTTTAATCAAGTTGATTTGTCTGAAGAGACAGTGGAAGAGAT
TAAGATCAGTGATTTGCGCCCCAATCCTTATCAGCCAAGAAAACAATTTGATGATGAGTCATTAGCTGAACTGAAGGAAT
CCATCATTCAGCATGGCATTCTTCAGCCCATTATCGTGAGAAAATCATTGAAGGGCTACGACATTGTAGCCGGCGAACGC
CGTTATCGCGCTGCAAAACTTGCCGGTAAAGAGACAGTACCGGCTATCGTGCGGGAGTTATCTGAATCGCTGATGCGGGA
AATCGCCCTATTGGAGAACCTTCAGCGGGAAGATTTATCACCGCTTGAAGAAGCTCTTGCATATGATTCACTGCTGAAGC
ATTTGGATATCACCCAGGAACAGCTCGCTAAACGACTCGGGAAAAGCAGACCTCATATTGCCAACCATTTAAGACTGCTG
ACGCTTCCTGAAAGCATCCAGAACCTCATTGCAGAAGGTACGTTATCCATGGGGCACGGCAGAACCCTGCTCGGTTTGAA
AAATAAAAACAAGCTTGAACCGCTTGTGAAGAAAGTGGTTGAAGAACAGCTTAACGTCCGTCAGCTTGAGCAGCTCATTC
AGCAATTAAACAGTAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTTCAAGATGTTGTGTTAAAAGAGCGGGAATCG
TATTTGCAAAATTACTTCGGAACAACAGTCAATATTAAGAGACAAAAGAAAAAGGGGAAAATTGAGATTGAGTTTTTCTC
AAATGAAGACCTTGAACGTATCCTTGAGCTTTTGTCTGAAAGAGAAGCGTAA

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(164-215)

ParB/Sulfiredoxin domain (ParB_N)

(25-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.538

91.873

0.382

Multiple sequence alignment