Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ID12_RS12560 Genome accession   NZ_CP009108
Coordinates   2498186..2498965 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain GR-8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2493186..2503965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS12540 (ID12_13045) trmFO 2493890..2495194 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ID12_RS12545 (ID12_13050) xerC 2495257..2496174 (+) 918 WP_050827261.1 tyrosine recombinase XerC -
  ID12_RS12550 (ID12_13055) hslV 2496189..2496734 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  ID12_RS12555 (ID12_13060) hslU 2496751..2498151 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  ID12_RS12560 (ID12_13065) codY 2498186..2498965 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ID12_RS12565 (ID12_13070) flgB 2499254..2499643 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  ID12_RS12570 (ID12_13075) flgC 2499643..2500095 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  ID12_RS12575 (ID12_13080) fliE 2500107..2500424 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  ID12_RS12580 (ID12_13085) fliF 2500475..2502067 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  ID12_RS12585 (ID12_13090) fliG 2502079..2503095 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  ID12_RS12590 (ID12_13095) fliH 2503088..2503852 (+) 765 WP_017359090.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=126873 ID12_RS12560 WP_007499612.1 2498186..2498965(+) (codY) [Bacillus altitudinis strain GR-8]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=126873 ID12_RS12560 WP_007499612.1 2498186..2498965(+) (codY) [Bacillus altitudinis strain GR-8]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGCAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment