Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WV34_RS04655 Genome accession   NZ_CP011252
Coordinates   903437..905254 (+) Length   605 a.a.
NCBI ID   WP_088612438.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 898437..910254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS04645 (WV34_04570) - 899116..901443 (+) 2328 WP_088612436.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  WV34_RS04650 (WV34_04575) - 901723..903456 (+) 1734 WP_088612437.1 ABC transporter ATP-binding protein -
  WV34_RS04655 (WV34_04580) rcrQ 903437..905254 (+) 1818 WP_088612438.1 ABC transporter ATP-binding protein Regulator
  WV34_RS04660 (WV34_04585) - 905421..905825 (+) 405 WP_013351420.1 DoxX family protein -
  WV34_RS04665 (WV34_04590) - 905842..906699 (+) 858 WP_088612439.1 VOC family protein -
  WV34_RS04670 (WV34_04595) cyoE 906989..907936 (+) 948 WP_088612440.1 heme o synthase -
  WV34_RS04675 (WV34_04600) - 907974..908525 (-) 552 WP_013351422.1 PadR family transcriptional regulator -
  WV34_RS04680 (WV34_04605) - 908774..909376 (+) 603 WP_088612441.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67518.26 Da        Isoelectric Point: 9.4271

>NTDB_id=126751 WV34_RS04655 WP_088612438.1 903437..905254(+) (rcrQ) [Bacillus amyloliquefaciens strain MT45]
MQKDIRKPFRYPKIPLKSSEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLSLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
RTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMFLSIKWITSRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALKSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGEIEFRDVSFGYQEDSLILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNEGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDLEVEEAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGHLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=126751 WV34_RS04655 WP_088612438.1 903437..905254(+) (rcrQ) [Bacillus amyloliquefaciens strain MT45]
GTGCAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCGAGTGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACACTGCGCAGGATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTGTCCCTCGTGATCA
TCATGGTAGTCATAAGCGCCATATTTGGCCTCCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTCATCGTCGGG
CGGACGACAGACGGATTGGCGGGGGTGCTGTTCATACTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATTTCTCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACTCATCTGCATGAACTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGCGACTTGATGAGCCGGGTCACCAATGATATTGAAAATGTCAGCTCCACT
TTAAATACATCAGTCATTCAGGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACGCTCTTGATTATTCCGATCATGTTTTTGAGCATCAAATGGATCACCAGCCGGACGGGACTGC
TCTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAATGGTTTTATTGAAGAGTCGATATCAGGTGCGAAAGTCATTAAA
GCCTACTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCATTAAAATCATCGGGATTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTAATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAAGGGTGGATCTCAATCGGTTCAATCGTCGTATTCGCCGAATACTCGCGGCAGTTCACGCGCCCTCTG
AATGATTTAGCCAATCAGTTCAACACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAGGAGCGGGAAGACGAAGAGCATGCGCTGTACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCTTGATCTTAAAACATCTCTCCTTCAGTGTTCCGAAAGGACAGTCAATCGCCTTTGTCGGCCCG
ACCGGAGCGGGTAAAACAACCGTCACAAGCCTGATTGCCCGCTTTTACGAGCCGAATGAAGGGAAAATTCTTATCGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAATATGGGGTTTGTCCTGCAGGATTCATTTCTTTTTCAGG
GCACCATCAGGGAAAATATCCGCTACGGCCGCTTGGATGCATCTGACCTAGAGGTGGAGGAAGCCGCTAAAGCCGCCAAT
GCCCACGGCTTCATTGAACGGCTCCCCAAAGGCTACGATACCGTTCTTACCCAAAACGGCGCGGGTATCAGCCAAGGGCA
AAAACAGCTCATTTCCATCGCGAGAGCTGTGCTGGCCGACCCGGTTCTGCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCATTTAATGGCGGGCAGAACAAGCGTCATCATCGCCCACAGG
CTGAATACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGTTTTTACCGGGAATTATATGAAAGCCAGTTCAGGGAATCATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(50-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.765

96.364

0.374