Detailed information NTG0126641

Bioinformatically predicted

Overview

• Name: priA
• Type: Machinery gene
• Locus tag: SMQ301_RS06850
• Genome accession: NZ_CP011217
• Coordinates: 1310887..1313283 (-)
• Length: 798 a.a.
• NCBI ID: WP_011681408.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain SMQ-301
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1305887..1318283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMQ301_RS06830 (SMQ301_1413)	stkP/pknB	1305970..1307841 (-)	1872	WP_046206487.1	Stk1 family PASTA domain-containing Ser/Thr kinase	Regulator
SMQ301_RS06835 (SMQ301_1414)	-	1307841..1308578 (-)	738	WP_011681405.1	Stp1/IreP family PP2C-type Ser/Thr phosphatase	-
SMQ301_RS06840 (SMQ301_1415)	rsmB	1308622..1309944 (-)	1323	WP_046206517.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
SMQ301_RS06845 (SMQ301_1416)	fmt	1309934..1310869 (-)	936	WP_046206488.1	methionyl-tRNA formyltransferase	-
SMQ301_RS06850 (SMQ301_1417)	priA	1310887..1313283 (-)	2397	WP_011681408.1	primosomal protein N'	Machinery gene
SMQ301_RS06855 (SMQ301_1418)	rpoZ	1313425..1313739 (-)	315	WP_002951415.1	DNA-directed RNA polymerase subunit omega	-
SMQ301_RS06860 (SMQ301_1419)	gmk	1313761..1314390 (-)	630	WP_011681409.1	guanylate kinase	-
SMQ301_RS06865 (SMQ301_1420)	ftsY	1314623..1316014 (-)	1392	WP_011681410.1	signal recognition particle-docking protein FtsY	-
SMQ301_RS06870 (SMQ301_1421)	-	1316025..1316843 (-)	819	WP_011681411.1	Cof-type HAD-IIB family hydrolase	-
SMQ301_RS06875 (SMQ301_1422)	-	1316836..1317630 (-)	795	WP_011681412.1	HAD-IIB family hydrolase	-
SMQ301_RS06880 (SMQ301_1423)	-	1317815..1318192 (+)	378	WP_011681413.1	GntR family transcriptional regulator	-

Sequence

Protein

• Length: 798 a.a.
• Molecular weight: 90743.89 Da
• Isoelectric Point: 6.8128

>NTDB_id=126641 SMQ301_RS06850 WP_011681408.1 1310887..1313283(-) (priA) [Streptococcus thermophilus strain SMQ-301]
MVLVAQIIVDVPLMQTDRPYSYLVPESMQGQITIGMRIHVPFGKGNRLLQGFVIGFGEQENVRNLPDLKPIAELLDYEPV
LNQDQLDLADQMRHTVFSYKISILKSMLPGLLNSQYDKVIMATDKLSEEERDIFLQGRDHILFSQLSKEQGQAIPRLVGS
GRVTVDYIARDKQNIKTEKHYSVQRGILETLDISQRAKKRLELRDFLLEKNEPGKLVDLHKLFSRDVVKFFIEAGALDIT
EVEVNRADSYFEKVEKTDFLELNAQQAHAVEVMTGQIGHGGKPFLLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEIS
LTPQMTNRFISRFGDLVAIMHSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLDNIGAIIIDEEHEATYKQESNPRYH
ARDVALLRSKSHGAILVLGSATPSIESRARAQKGVYHFFKLTERANPSAKIPQVEVVDFKDFVGRQEASDFTPPLLEKIR
ERLARKEQVVLLLNRRGYSSFVMCRDCGYVDDCPNCDISLTLHMDTKTMNCHYCDFQKAIPNVCPNCQSRQIRYYGTGTQ
KAYDQLTELFPEARVIRMDVDTTRKKGAHEKLLETFGSGKADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSAE
RTFQLLTQVAGRAGRGDKEGEVIIQTYNPSHYAIRFAQQQDYEGFYAYEMGIRRQLAYPPYFYTVGITLSHKDEEFVVRK
SYDVMACLREHLSDKVTFLGPTPKPIARTHNLYHYQIIIKYRFEDSLEETLNRILDMTQEPENKDLRLIIDHEPQNFT

Nucleotide

• Length: 2397 bp

>NTDB_id=126641 SMQ301_RS06850 WP_011681408.1 1310887..1313283(-) (priA) [Streptococcus thermophilus strain SMQ-301]
ATGGTTTTAGTTGCACAAATAATTGTAGATGTTCCTCTAATGCAGACGGACAGGCCTTATAGTTACCTTGTACCAGAATC
CATGCAGGGGCAAATTACCATCGGTATGAGGATTCATGTGCCTTTTGGTAAAGGAAATCGTCTCTTGCAAGGGTTTGTTA
TTGGCTTTGGAGAGCAAGAAAATGTAAGAAATCTGCCAGACTTGAAGCCAATTGCGGAACTTTTGGATTATGAACCAGTC
CTTAATCAGGATCAGCTGGATTTGGCTGACCAAATGCGACACACGGTTTTTTCCTATAAGATTTCCATCTTGAAGTCTAT
GCTTCCGGGTCTCCTTAATTCACAGTATGACAAAGTTATCATGGCAACTGATAAACTGAGCGAAGAGGAGAGGGACATTT
TTCTTCAGGGGCGAGACCATATTCTCTTCTCTCAATTGTCGAAAGAACAAGGTCAAGCCATTCCGCGTTTGGTGGGATCT
GGTCGCGTAACGGTTGATTACATTGCTAGGGATAAACAAAATATAAAAACGGAGAAACATTATAGTGTGCAAAGAGGCAT
TTTAGAGACTTTGGATATTTCGCAACGAGCCAAGAAGCGGCTGGAGTTGCGGGACTTCTTGTTAGAAAAGAATGAGCCTG
GAAAGTTAGTAGACCTGCATAAACTTTTTTCTCGAGATGTGGTGAAGTTTTTCATTGAGGCTGGAGCTCTAGACATCACT
GAAGTTGAGGTCAATCGTGCTGATAGCTACTTTGAAAAGGTAGAGAAGACGGATTTTCTAGAGCTTAATGCTCAGCAAGC
ACATGCTGTTGAAGTAATGACAGGTCAGATTGGTCATGGTGGGAAGCCGTTCTTGTTGGAAGGAGTGACGGGGTCAGGTA
AGACTGAGGTTTACCTGCATCTTATTGAGAGAACCTTGGCTATGGGAAAAACTGCCATTGTCTTGGTTCCAGAAATTTCT
CTGACGCCACAAATGACCAATCGTTTCATCTCCCGTTTTGGTGACTTGGTAGCAATCATGCATTCAGGCTTGTCAGATGG
TGAAAAATTTGACGAGTGGCGTAAGGTTAGGTCTGGTCAAGCAAAAGTCGTTGTAGGAGCACGTTCTGCTATCTTTGCTC
CCTTGGACAATATTGGAGCTATCATTATCGATGAGGAGCACGAGGCGACCTATAAGCAGGAATCCAATCCTCGCTATCAT
GCTAGAGATGTGGCCTTGCTTAGGTCCAAAAGCCATGGCGCTATTCTTGTACTTGGTTCAGCCACGCCTTCTATTGAGTC
GCGAGCGAGGGCTCAGAAAGGGGTCTACCATTTTTTTAAATTGACGGAGAGGGCCAATCCTAGTGCTAAAATTCCGCAGG
TTGAAGTGGTGGACTTTAAGGACTTTGTCGGTAGACAAGAGGCGAGTGATTTTACGCCACCTCTCTTGGAGAAAATCCGA
GAGCGATTGGCACGTAAGGAACAAGTCGTTTTGTTGTTGAATCGTCGTGGATATTCTTCATTTGTCATGTGTCGTGACTG
TGGCTATGTGGATGACTGTCCGAACTGTGATATTTCACTGACTTTGCATATGGATACCAAGACCATGAATTGTCACTACT
GTGATTTTCAAAAAGCTATTCCTAATGTCTGTCCTAATTGCCAGAGTCGTCAGATTCGCTATTATGGGACTGGGACACAG
AAGGCTTATGATCAATTGACGGAACTTTTTCCAGAAGCCAGAGTGATTCGTATGGATGTTGATACTACACGTAAAAAAGG
CGCTCACGAGAAACTTTTAGAGACTTTTGGGAGTGGCAAGGCTGATATTCTGCTAGGCACTCAAATGATTGCCAAGGGCT
TGGATTTTCCCAATGTTACCTTGGTAGGGGTCTTAAATGCGGATACGTCGCTAAATTTACCAGATTTTCGTTCGGCTGAG
CGCACTTTCCAGCTGTTGACTCAGGTGGCTGGTCGTGCTGGTCGTGGGGACAAGGAAGGGGAGGTTATTATTCAGACCTA
TAACCCTAGTCATTATGCCATTCGTTTTGCTCAGCAACAGGATTATGAGGGATTCTATGCCTATGAGATGGGGATTCGCC
GTCAGTTGGCCTACCCGCCATATTTTTATACGGTAGGGATCACTCTTTCCCACAAGGATGAAGAGTTTGTAGTCCGTAAG
AGCTATGATGTCATGGCTTGTTTAAGAGAACATTTGTCGGACAAGGTGACTTTCTTGGGACCAACACCAAAACCTATTGC
CCGAACACATAACCTTTATCATTATCAGATTATTATCAAATATCGTTTTGAGGATAGCTTGGAAGAGACACTTAATAGGA
TCCTTGATATGACTCAGGAACCTGAAAATAAGGATCTACGTTTGATTATCGATCATGAGCCTCAGAATTTTACCTAA

Domains

Predicted by InterProScan.

• Primosomal protein N C-terminal domain (PriA_C) (700-794)

• Helicase conserved C-terminal domain (Helicase_C) (567-656)

• Type III restriction enzyme, res subunit (ResIII) (260-424)

• 3DNA-binding domain (3BD) (PriA_3primeBD) (6-109)

• PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA) (513-538)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
priA	Bacillus subtilis subsp. subtilis str. 168	47.826	100	0.482