Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   NCDO2118_RS11065 Genome accession   NZ_CP009054
Coordinates   2272333..2273271 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   A0A2A9ILQ4
Organism   Lactococcus lactis subsp. lactis NCDO 2118     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267333..2278271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCDO2118_RS11040 (NCDO2118_2118) frr 2267450..2268007 (-) 558 WP_004254618.1 ribosome recycling factor -
  NCDO2118_RS11045 (NCDO2118_2119) pyrH 2268220..2268936 (-) 717 WP_004254608.1 UMP kinase -
  NCDO2118_RS11050 (NCDO2118_2120) - 2269021..2269473 (-) 453 WP_012898517.1 hypothetical protein -
  NCDO2118_RS11055 (NCDO2118_2121) - 2269607..2270794 (-) 1188 WP_038603744.1 acetate kinase -
  NCDO2118_RS11060 (NCDO2118_2122) - 2270951..2272138 (-) 1188 WP_012898519.1 acetate kinase -
  NCDO2118_RS11065 (NCDO2118_2123) comYH 2272333..2273271 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  NCDO2118_RS11070 (NCDO2118_2124) - 2273359..2273610 (-) 252 WP_004254583.1 DUF3165 family protein -
  NCDO2118_RS11075 (NCDO2118_2125) typA 2273711..2275543 (-) 1833 WP_025016832.1 translational GTPase TypA -
  NCDO2118_RS11080 (NCDO2118_2126) - 2275731..2276189 (-) 459 WP_012898521.1 hypothetical protein -
  NCDO2118_RS11085 (NCDO2118_2127) - 2276204..2276977 (-) 774 WP_012898522.1 hypothetical protein -
  NCDO2118_RS11090 (NCDO2118_2128) - 2277314..2277940 (-) 627 WP_038603746.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=126444 NCDO2118_RS11065 WP_012898520.1 2272333..2273271(-) (comYH) [Lactococcus lactis subsp. lactis NCDO 2118]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=126444 NCDO2118_RS11065 WP_012898520.1 2272333..2273271(-) (comYH) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGCTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGCTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9ILQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment